BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920465
Length=586
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15610.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 355 2e-97
AT1G15620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 222 3e-57
> AT1G15610.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G15630.1);
Has 129 Blast hits to 129 proteins in 15 species: Archae -
0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 127; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5370757-5371679
FORWARD LENGTH=768
Length=768
Score = 355 bits (192), Expect = 2e-97
Identities = 329/391 (84%), Gaps = 25/391 (6%)
Strand=Plus/Plus
Query 1 AGAAGAAAACAAAAAGGT-ATCAATGGAGGGCCCTTTGTTGACCAAGAGTGGGCACAACG 59
|||||||| |||||| || ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 14 AGAAGAAAGCAAAAAAGTGATCAATGGAGGGCCCTTTGTTAACCAAGAGTGAGCACAACG 73
Query 60 TCGATGACGTTACAATCCATGGCGATTCTTCCTCGAATGATGAGCACATCGTCGACATAA 119
|||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 74 TCGAAGACGTTACAATCCATGGCGATTCTTCCTCAAATGATGAGCACATCATCGACATTA 133
Query 120 CAATCAATGGCAATTC-T-----G---AT---GAGCAAACACCACGTGAGAGTGTT-CAA 166
||||||||||| ||| | | || |||||||| |||| |||| | || |||
Sbjct 134 CAATCAATGGCGGTTCGTCATCAGCTGATCATGAGCAAACTCCACATGAG-GCATTTCAA 192
Query 167 TGGAGT-GTTCAATCCACAAATCGATGTGTT-TGGATTTTGGTCGAGTTTGTTATGACTT 224
|||||| || || | |||| | || || || ||||||||||||||||| | | ||||||
Sbjct 193 TGGAGTTGTCCATTT-ACAAGTGGAAGT-TTCTGGATTTTGGTCGAGTTAGCTGTGACTT 250
Query 225 TGTTCCAGATTGTTGCAGCCATAtttttt-tGTACTCTGACAAAAGATGAAC-AGAATCC 282
|| |||||||||||||||||||||||||| || | ||| ||||||||||||| ||| |||
Sbjct 251 TGGTCCAGATTGTTGCAGCCATATTTTTTCTG-ATTCTAACAAAAGATGAACGAGA-TCC 308
Query 283 AGAACTAGAAGAATATTGGTTTATATGGATCATCGGTTATACTTGTGCCTCTATTGCCAC 342
||||||||| | | || ||||| |||||||||| ||||||||||||||||||||||||
Sbjct 309 AGAACTAGATGTAGCTTTGTTTACATGGATCATCTTTTATACTTGTGCCTCTATTGCCAC 368
Query 343 TCTT-CCTCTTCTATGTTGGCGTTTATGGCA 372
| || ||| || ||||||| |||||||||||
Sbjct 369 T-TTGCCTTTTGTATGTTGCCGTTTATGGCA 398
Score = 86.1 bits (46), Expect = 3e-16
Identities = 72/85 (85%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 387 GGTTATGGATGGCTCTACTTGCTTTCAGTTGCATTCGATATGTGCTCCCTAACCTCGAAT 446
|||||||| ||| ||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 554 GGTTATGGCTGGGTCTACTTGCTTTCAGTTGCATTCGATATGTGCTTCCTAATTTCCAAT 613
Query 447 TTTCAGTAAAGTCCTTCGTGTGGCC 471
|| | ||| ||| ||| ||| |||
Sbjct 614 TTACCGTACAGTTATTCATGTTGCC 638
> AT1G15620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G15640.1);
Has 125 Blast hits to 124 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5373504-5374575
FORWARD LENGTH=886
Length=886
Score = 222 bits (120), Expect = 3e-57
Identities = 308/393 (78%), Gaps = 36/393 (9%)
Strand=Plus/Plus
Query 1 AGAAGAAAACAAAAAGGT-ATCAATGGAGGGCCCTTTGTTGAC-CAAGAGTGGGCACAAC 58
|||||||| | | || || || |||||||| |||||||||||| | |||||| ||||| |
Sbjct 29 AGAAGAAAGC-AGAA-GTGATAAATGGAGGACCCTTTGTTGACTC-AGAGTGAGCACATC 85
Query 59 GTCGATGACGTTACAATCCATGGCGATTCTTCCTCGAATGATGAGCACATCGTCGACATA 118
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
Sbjct 86 GTCGATGACGTTACAATCCATGGCGATTCTTCTTCAAATGAAGAGCACATCGTCGACGTT 145
Query 119 ACAATCAATGGCAAT--T-C-T--G---ATGAGCAAACACCACGTGAGAGTGTTCAATGG 169
|||| |||||||||| | | | | ||||| ||| ||| | |||| |||| ||||||
Sbjct 146 ACAACCAATGGCAATCCTTCATCAGCTGATGAGAAAAGACCGCATGAGGGTGTCCAATGG 205
Query 170 AGTGTTCA-ATCCACAAAT-CGATGTGTTTGGATTTTGGTCGAGTTTGTTATGACTTT-G 226
|||| | | || ||| | | | |||||| |||||||||||||||||| || |||| |
Sbjct 206 AGTGAT-ATATTTACATTTACCAC-TGTTTGTATTTTGGTCGAGTTTGTTGTGGCTTTAG 263
Query 227 TTCCAGATTGTTGCAGCCATAtttt-tt-tGTACTCTGACAAAAGATGAACAGAA-TCCA 283
| |||||||||||| ||||| | || || || |||||| ||||||||||||| | ||||
Sbjct 264 T-CCAGATTGTTGCCGCCAT-TGTTGTTCTG-ACTCTGGCAAAAGATGAACA-ACCTCCA 319
Query 284 GAACTAGAAGAATATTGGTTTATA-TGGATCATCGGTTATACTTGT-GCCTCTATTGCCA 341
|| | || | | || | | | || ||| || ||||||| || || | ||||||||
Sbjct 320 CAA--A-AA-A-TGTTTCCT-ACACTG-ATCCTCAGTTATACCGGTTGC-TGTATTGCCA 371
Query 342 CTCTTCCTCTTCTATGTTGGCGTTTATGGCATT 374
| || ||| ||||| ||| |||||| |||||||
Sbjct 372 CACTCCCTATTCTAGGTTTGCGTTTCTGGCATT 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28181356467
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5