BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920473
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15700.1 | Symbols: ATPC2 | ATPase, F1 complex, gamma subuni... 1821 0.0
AT4G04640.1 | Symbols: ATPC1 | ATPase, F1 complex, gamma subuni... 239 5e-62
> AT1G15700.1 | Symbols: ATPC2 | ATPase, F1 complex, gamma subunit
protein | chr1:5402569-5403818 REVERSE LENGTH=1250
Length=1250
Score = 1821 bits (986), Expect = 0.0
Identities = 1118/1180 (95%), Gaps = 15/1180 (1%)
Strand=Plus/Plus
Query 10 CCCAAACGAAAATGACAGGTTCGATCTCAACCTCTTGGCTCTTGTCGTCTCCTTCGAATT 69
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 19 CCCAAACGAAAATGACAGGTTCGATCTCGACCTCTTGGCTCTTGTCGTCTCCTTCGAATT 78
Query 70 C-AA----------AG-TCAGATTCCTTCTCTTTCATAGCTACCTTGAAACCATTTCGCT 117
| || || ||||| |||| ||||||||||||||||||||||||| |||| |
Sbjct 79 CGAATTCGGCTTCGAGCTCAGAGTCCTACTCTTTCATAGCTACCTTGAAACCAGTTCGTT 138
Query 118 ATTATCCGTTTCAATCACTGACTCCAAATCGGATTTCGTCGAGATCTCCGTTG---TCAA 174
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 139 ATTATCCGTTTCAATCACTGACACCAAACCGGATTTCGTCGAGATCTCCGTTGCCCTCAA 198
Query 175 TTCAAATTCGATCTGGAATCCGAGAGTTACGAGAAAGAATCGACAGTGTGAAGAATACCC 234
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 199 TTCAAATTCGAGCTGGAATCCGAGAGTTACGAGAACGAATCGACAGTGTGAAGAATACCC 258
Query 235 AGAAGATAACGGAGGCGATGAGACTCGTGGCAGCAGCTAGAGTTCGTCGAGCTCAAGATG 294
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 259 AGAAGATAACGGAAGCGATGAGACTCGTGGCGGCAGCTAGAGTTCGTCGAGCTCAAGATG 318
Query 295 CTGTCATAAAGGGTAGACCTTTCACTGAAACCCTAGTGGAGATTCTCTACTCAATTAACC 354
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 319 CAGTCATAAAGGGTAGACCTTTCACTGAAACTCTTGTGGAGATTCTCTACTCAATTAACC 378
Query 355 AATGTGCTCAATTGGAAGACATTGATTTCCCTCTGAGCATTGTTAGACCTGTGAAGAGAG 414
||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 379 AATCTGCTCAATTAGAAGACATTGATTTTCCTCTGAGCATTGTTAGACCCGTGAAGAGAG 438
Query 415 TTGCTTTAGTTGTTGTTACCGGTGATAAAGGATTGTGTGGTGGTTTCAACAATGCAGTCA 474
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 439 TTGCTTTGGTTGTTGTTACTGGCGATAAAGGATTGTGTGGTGGTTTCAACAATGCAGTGA 498
Query 475 TCAAGAAAGCTACTTTGCGAGTTCAGGAGTTGAAGCAAAGAGGAATAGACTGTGTTGTGA 534
||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 499 CCAAGAAAGCTACTCTGCGAGTTCAAGAGTTGAAGCAGAGAGGAATAGACTGTGTTGTGA 558
Query 535 TTAGTGTGGGTAAGAAAGGGAATGCGTATTTTAGTCGGAGAGATGAATTCGAAGTTGATA 594
| ||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 559 TAAGTGTAGGTAAGAAAGGGAATGCTTATTTTAGTCGGAGAGATGAATTTGATGTTGATA 618
Query 595 AATGTATTGAAGGAGGAGGTGTTTTTCCAACGACTAAAGAAGCTCAAGTTATTGCAGATG 654
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 619 AATGTATTGAAGGAGGAGGTGTTTTCCCAACGACTAAAGAAGCTCAAGTTATTGCAGATG 678
Query 655 ATGTCTTTTCCTTGTTTGTCAGTGAAGAAGTTGATAAAGTTGAGCTTGTTTACACAAAGT 714
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 679 ATGTGTTTTCCTTGTTTGTCAGTGAAGAGGTTGATAAAGTTGAGCTTGTTTACACAAAGT 738
Query 715 TTGTGTCTTTGGTGAAATCTGATCCTGTGGTTCACACTCTGTTGCCTTTGTCTATGAAAG 774
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 739 TTGTGTCTTTGGTGAAATCTGATCCTGTGATCCACACTCTGTTGCCTTTGTCGATGAAAG 798
Query 775 GAGAGTCTTGTGATGTGAAAGGAGAGTGTGTTGATGCTATGGAGGATGAGATGTTTAGGC 834
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 799 GAGAGTCTTGTGATGTGAAAGGTGAGTGTGTTGATGCTATCGAGGATGAGATGTTTAGGC 858
Query 835 TAACGAGCAAAGATGGGAAGTTAGCTGTGGAAAGGACCAAGCTTGAAGTTGAGAAGCCTG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TAACGAGCAAAGATGGGAAGTTAGCTGTGGAAAGGACCAAGCTTGAAGTTGAGAAGCCTG 918
Query 895 AGATATCACCATTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGC 954
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 AGATCTCACCGTTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGC 978
Query 955 CTTTGTATCTCAACAGTCAGATTCTAAGAGCACTGCAGGAGTCTTTAGCGAGTGAGCTCG 1014
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 979 CTTTGTATCTCAACAGTCAGATTCTAAGAGCACTGCAGGAATCTTTAGCGAGTGAGCTTG 1038
Query 1015 CGTCGAGGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAATTGAAGAAGAATC 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 CGTCGAGGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAATTGAAGAAGAATC 1098
Query 1075 TGACAATGGCTTATAATCGAGCGAGACAGGCTAAGATCACTGGGGAGTTGCTGGAGATTG 1134
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TGACGATGGCTTATAACCGAGCGAGACAGGCTAAGATCACTGGGGAGTTGCTGGAGATTG 1158
Query 1135 TGGCTGGAGCAGAGGCTCTTCGAGAGTCTTAGTTAGAAAC 1174
||||||||||||| |||||||||||||||||| |||||||
Sbjct 1159 TGGCTGGAGCAGAAGCTCTTCGAGAGTCTTAGGTAGAAAC 1198
> AT4G04640.1 | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit
protein | chr4:2350498-2352018 REVERSE LENGTH=1521
Length=1521
Score = 239 bits (129), Expect = 5e-62
Identities = 416/549 (76%), Gaps = 42/549 (8%)
Strand=Plus/Plus
Query 617 TTTTCCAACGACTAAAGAAGCTCAAGTTATTGCAGATGATGTCTTTTCCT-TGTTTGTCA 675
||| || ||| ||||||||||||||| | | || ||||||||||| | || ||||| | |
Sbjct 715 TTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATGATGTCTTCT-CTCTGTTTATAA 773
Query 676 GTGAAGAAGTTGATAAAGTTGAGCTTGTT-TACACAAAGTTTGTGTCTTTGGTGAAATCT 734
|||||||||| || ||||| |||| | || |||||||||||||| |||||||| |||||
Sbjct 774 GTGAAGAAGTCGACAAAGTCGAGC-TCTTGTACACAAAGTTTGTCTCTTTGGTCAAATCA 832
Query 735 GATCCTGTGGTTCACACTCTGTTGCCTTTGTCTA--TGAAAGGAGAG-TCTTGTGATGTG 791
|| || ||| | ||||| || ||||||| || | | ||||||||| || ||||| |
Sbjct 833 GAACCCGTGATCCACACGCTACTGCCTTTATC-ACCT-AAAGGAGAGATC-TGTGACATT 889
Query 792 AAAGGAGA-GTGTGTTGATGCTATGGAGGATGAGATGTTT-AGGCTAACGAGC-AAAGAT 848
|| ||| | ||||| |||||| ||| |||||| | ||| ||| |||||| | |||||
Sbjct 890 AATGGA-ACCTGTGTGGATGCTGCGGAAGATGAG-TTTTTCAGGTTAACGA-CAAAAGAA 946
Query 849 GGGAAGTTAG-CTGTGGAAAGGACCAAG-CTTGAAGTTGAGA--AGC--CTGAGATATCA 902
||||| || | | || |||| || || ||| || || | | | |||| | ||
Sbjct 947 GGGAAATT-GACAGTTGAAA-GA--GAGACTTTTAG--GACACCAACAGCTGATTTCTCG 1000
Query 903 CC-ATTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGCCTTTGTA 961
|| | | |||| || ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1001 CCGA-TCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGCCTCTGTA 1059
Query 962 TCTCAACAGTCAGATTCTAAGAGCACTGCAGGAGTCTTTAGCGAGTGAGCTCGC-GTCGA 1020
||| |||||||||||||| || ||| | |||||||| || || |||||||| || | | |
Sbjct 1060 TCTTAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTGCAG-CTA 1118
Query 1021 GGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAAT-TGAAGAAGAATC--TGA 1077
| |||| ||| ||||||| ||| | |||||||| | | || | ||||| | || |
Sbjct 1119 GAATGAGTGCAATGAGTAGTGCTTCGGATAATGCA-TCGGATCTCAAGAA-A-TCGCTTT 1175
Query 1078 CAATGGCT-TATAATCGAGCGAGACAGGCTAAGATCACTGGGGAG-TTGCTGGAGATTGT 1135
| |||| | |||||| || | | || |||||||| ||||| ||| || || ||||||||
Sbjct 1176 CGATGG-TGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATT-CTTGAGATTGT 1233
Query 1136 GGCTGGAGC 1144
||||||||
Sbjct 1234 TGCTGGAGC 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58282832745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5