BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920473 Length=1187 Score E Sequences producing significant alignments: (Bits) Value AT1G15700.1 | Symbols: ATPC2 | ATPase, F1 complex, gamma subuni... 1821 0.0 AT4G04640.1 | Symbols: ATPC1 | ATPase, F1 complex, gamma subuni... 239 5e-62 > AT1G15700.1 | Symbols: ATPC2 | ATPase, F1 complex, gamma subunit protein | chr1:5402569-5403818 REVERSE LENGTH=1250 Length=1250 Score = 1821 bits (986), Expect = 0.0 Identities = 1118/1180 (95%), Gaps = 15/1180 (1%) Strand=Plus/Plus Query 10 CCCAAACGAAAATGACAGGTTCGATCTCAACCTCTTGGCTCTTGTCGTCTCCTTCGAATT 69 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 19 CCCAAACGAAAATGACAGGTTCGATCTCGACCTCTTGGCTCTTGTCGTCTCCTTCGAATT 78 Query 70 C-AA----------AG-TCAGATTCCTTCTCTTTCATAGCTACCTTGAAACCATTTCGCT 117 | || || ||||| |||| ||||||||||||||||||||||||| |||| | Sbjct 79 CGAATTCGGCTTCGAGCTCAGAGTCCTACTCTTTCATAGCTACCTTGAAACCAGTTCGTT 138 Query 118 ATTATCCGTTTCAATCACTGACTCCAAATCGGATTTCGTCGAGATCTCCGTTG---TCAA 174 |||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| Sbjct 139 ATTATCCGTTTCAATCACTGACACCAAACCGGATTTCGTCGAGATCTCCGTTGCCCTCAA 198 Query 175 TTCAAATTCGATCTGGAATCCGAGAGTTACGAGAAAGAATCGACAGTGTGAAGAATACCC 234 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 199 TTCAAATTCGAGCTGGAATCCGAGAGTTACGAGAACGAATCGACAGTGTGAAGAATACCC 258 Query 235 AGAAGATAACGGAGGCGATGAGACTCGTGGCAGCAGCTAGAGTTCGTCGAGCTCAAGATG 294 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 259 AGAAGATAACGGAAGCGATGAGACTCGTGGCGGCAGCTAGAGTTCGTCGAGCTCAAGATG 318 Query 295 CTGTCATAAAGGGTAGACCTTTCACTGAAACCCTAGTGGAGATTCTCTACTCAATTAACC 354 | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 319 CAGTCATAAAGGGTAGACCTTTCACTGAAACTCTTGTGGAGATTCTCTACTCAATTAACC 378 Query 355 AATGTGCTCAATTGGAAGACATTGATTTCCCTCTGAGCATTGTTAGACCTGTGAAGAGAG 414 ||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 379 AATCTGCTCAATTAGAAGACATTGATTTTCCTCTGAGCATTGTTAGACCCGTGAAGAGAG 438 Query 415 TTGCTTTAGTTGTTGTTACCGGTGATAAAGGATTGTGTGGTGGTTTCAACAATGCAGTCA 474 ||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| | Sbjct 439 TTGCTTTGGTTGTTGTTACTGGCGATAAAGGATTGTGTGGTGGTTTCAACAATGCAGTGA 498 Query 475 TCAAGAAAGCTACTTTGCGAGTTCAGGAGTTGAAGCAAAGAGGAATAGACTGTGTTGTGA 534 ||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 499 CCAAGAAAGCTACTCTGCGAGTTCAAGAGTTGAAGCAGAGAGGAATAGACTGTGTTGTGA 558 Query 535 TTAGTGTGGGTAAGAAAGGGAATGCGTATTTTAGTCGGAGAGATGAATTCGAAGTTGATA 594 | ||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct 559 TAAGTGTAGGTAAGAAAGGGAATGCTTATTTTAGTCGGAGAGATGAATTTGATGTTGATA 618 Query 595 AATGTATTGAAGGAGGAGGTGTTTTTCCAACGACTAAAGAAGCTCAAGTTATTGCAGATG 654 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 619 AATGTATTGAAGGAGGAGGTGTTTTCCCAACGACTAAAGAAGCTCAAGTTATTGCAGATG 678 Query 655 ATGTCTTTTCCTTGTTTGTCAGTGAAGAAGTTGATAAAGTTGAGCTTGTTTACACAAAGT 714 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 679 ATGTGTTTTCCTTGTTTGTCAGTGAAGAGGTTGATAAAGTTGAGCTTGTTTACACAAAGT 738 Query 715 TTGTGTCTTTGGTGAAATCTGATCCTGTGGTTCACACTCTGTTGCCTTTGTCTATGAAAG 774 ||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| Sbjct 739 TTGTGTCTTTGGTGAAATCTGATCCTGTGATCCACACTCTGTTGCCTTTGTCGATGAAAG 798 Query 775 GAGAGTCTTGTGATGTGAAAGGAGAGTGTGTTGATGCTATGGAGGATGAGATGTTTAGGC 834 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 799 GAGAGTCTTGTGATGTGAAAGGTGAGTGTGTTGATGCTATCGAGGATGAGATGTTTAGGC 858 Query 835 TAACGAGCAAAGATGGGAAGTTAGCTGTGGAAAGGACCAAGCTTGAAGTTGAGAAGCCTG 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 859 TAACGAGCAAAGATGGGAAGTTAGCTGTGGAAAGGACCAAGCTTGAAGTTGAGAAGCCTG 918 Query 895 AGATATCACCATTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGC 954 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 919 AGATCTCACCGTTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGC 978 Query 955 CTTTGTATCTCAACAGTCAGATTCTAAGAGCACTGCAGGAGTCTTTAGCGAGTGAGCTCG 1014 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 979 CTTTGTATCTCAACAGTCAGATTCTAAGAGCACTGCAGGAATCTTTAGCGAGTGAGCTTG 1038 Query 1015 CGTCGAGGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAATTGAAGAAGAATC 1074 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1039 CGTCGAGGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAATTGAAGAAGAATC 1098 Query 1075 TGACAATGGCTTATAATCGAGCGAGACAGGCTAAGATCACTGGGGAGTTGCTGGAGATTG 1134 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1099 TGACGATGGCTTATAACCGAGCGAGACAGGCTAAGATCACTGGGGAGTTGCTGGAGATTG 1158 Query 1135 TGGCTGGAGCAGAGGCTCTTCGAGAGTCTTAGTTAGAAAC 1174 ||||||||||||| |||||||||||||||||| ||||||| Sbjct 1159 TGGCTGGAGCAGAAGCTCTTCGAGAGTCTTAGGTAGAAAC 1198 > AT4G04640.1 | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit protein | chr4:2350498-2352018 REVERSE LENGTH=1521 Length=1521 Score = 239 bits (129), Expect = 5e-62 Identities = 416/549 (76%), Gaps = 42/549 (8%) Strand=Plus/Plus Query 617 TTTTCCAACGACTAAAGAAGCTCAAGTTATTGCAGATGATGTCTTTTCCT-TGTTTGTCA 675 ||| || ||| ||||||||||||||| | | || ||||||||||| | || ||||| | | Sbjct 715 TTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATGATGTCTTCT-CTCTGTTTATAA 773 Query 676 GTGAAGAAGTTGATAAAGTTGAGCTTGTT-TACACAAAGTTTGTGTCTTTGGTGAAATCT 734 |||||||||| || ||||| |||| | || |||||||||||||| |||||||| ||||| Sbjct 774 GTGAAGAAGTCGACAAAGTCGAGC-TCTTGTACACAAAGTTTGTCTCTTTGGTCAAATCA 832 Query 735 GATCCTGTGGTTCACACTCTGTTGCCTTTGTCTA--TGAAAGGAGAG-TCTTGTGATGTG 791 || || ||| | ||||| || ||||||| || | | ||||||||| || ||||| | Sbjct 833 GAACCCGTGATCCACACGCTACTGCCTTTATC-ACCT-AAAGGAGAGATC-TGTGACATT 889 Query 792 AAAGGAGA-GTGTGTTGATGCTATGGAGGATGAGATGTTT-AGGCTAACGAGC-AAAGAT 848 || ||| | ||||| |||||| ||| |||||| | ||| ||| |||||| | ||||| Sbjct 890 AATGGA-ACCTGTGTGGATGCTGCGGAAGATGAG-TTTTTCAGGTTAACGA-CAAAAGAA 946 Query 849 GGGAAGTTAG-CTGTGGAAAGGACCAAG-CTTGAAGTTGAGA--AGC--CTGAGATATCA 902 ||||| || | | || |||| || || ||| || || | | | |||| | || Sbjct 947 GGGAAATT-GACAGTTGAAA-GA--GAGACTTTTAG--GACACCAACAGCTGATTTCTCG 1000 Query 903 CC-ATTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGCCTTTGTA 961 || | | |||| || ||||||||||||||||||||||||||||| || ||||| |||| Sbjct 1001 CCGA-TCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGCCTCTGTA 1059 Query 962 TCTCAACAGTCAGATTCTAAGAGCACTGCAGGAGTCTTTAGCGAGTGAGCTCGC-GTCGA 1020 ||| |||||||||||||| || ||| | |||||||| || || |||||||| || | | | Sbjct 1060 TCTTAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTGCAG-CTA 1118 Query 1021 GGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAAT-TGAAGAAGAATC--TGA 1077 | |||| ||| ||||||| ||| | |||||||| | | || | ||||| | || | Sbjct 1119 GAATGAGTGCAATGAGTAGTGCTTCGGATAATGCA-TCGGATCTCAAGAA-A-TCGCTTT 1175 Query 1078 CAATGGCT-TATAATCGAGCGAGACAGGCTAAGATCACTGGGGAG-TTGCTGGAGATTGT 1135 | |||| | |||||| || | | || |||||||| ||||| ||| || || |||||||| Sbjct 1176 CGATGG-TGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATT-CTTGAGATTGT 1233 Query 1136 GGCTGGAGC 1144 |||||||| Sbjct 1234 TGCTGGAGC 1242 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58282832745 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5