BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920474
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15710.1 | Symbols: | prephenate dehydrogenase family prote... 1720 0.0
> AT1G15710.1 | Symbols: | prephenate dehydrogenase family protein
| chr1:5404358-5405686 FORWARD LENGTH=1329
Length=1329
Score = 1720 bits (931), Expect = 0.0
Identities = 1029/1078 (95%), Gaps = 0/1078 (0%)
Strand=Plus/Plus
Query 5 CTCAATAAACACTACTCACAATGCTACTCCATTTCTCTCCGGCGAAACCCCTAATTTCTC 64
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 128 CTCAATCAACACTACTCACAATGCTACTCCATTTCTCTCCGGCGAAACCCCTCATTTCTC 187
Query 65 CACACAATCTCCGCCGCAATTCACCCGCATTCCTCATTTCCCCGCCGCGATCCCTTCGAA 124
||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 188 CACCCAATCTCCGCCGCAATTCACCCACATTCCTCATTTCCCCGCCGCGATCTCTTCGAA 247
Query 125 TTCGAGCAATCGACGCCGCCCAAATCTTCGATTACGAAACCCAGCTCAAATCCGAGTACC 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 248 TTCGAGCAATCGACGCCGCCCAAATCTTCGATTACGAAACCCAACTCAAATCCGAGTACC 307
Query 185 GTAAATCCTCTGCTCTCAAAATCGCCGTCTTGGGTTTCGGCAATTTCGGTCAATTCCTCT 244
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 308 GCAAATCCTCTGCTCTCAAAATCGCCGTCTTGGGTTTCGGCAATTTCGGCCAATTCCTCT 367
Query 245 CCAAAACCCTAATTCGACACGGCCACGACCTAATCACTCACTCTCGCTCCGATTACTCCG 304
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 368 CCAAAACCCTAATTCGACACGGCCACGATCTAATCACTCACTCCCGCTCCGATTACTCCG 427
Query 305 ACGCCGCTAACTCAATCGGAGCTCGTTTCTTCGGTAACCCTCACGATCTCTGCGAACAAC 364
||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 428 ACGCCGCAAACTCAATCGGAGCTCGTTTCTTCGATAACCCTCACGATCTCTGTGAACAAC 487
Query 365 ATCCCGACGTTGTCCTCCTCTGCACTTCAATCCTCTCCACAGAATCAGTCCTCAGATCCT 424
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 488 ATCCCGACGTTGTCCTCCTCTGTACCTCAATCCTCTCCACAGAATCAGTCCTCAGATCAT 547
Query 425 TCCCTTTCCAACGTCTCCGTCGTAGCACACTCTTCGTCGATGTTCTCTCCGTTAAAGAAT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 548 TCCCTTTCCAACGTCTCCGTCGTAGCACACTCTTCGTCGATGTTCTCTCCGTTAAGGAAT 607
Query 485 TCCCAAAAGCCCTCTTCCTCAAATACCTCCCCAAAGAGTTCGACATTCTCTGCACTCATC 544
||||||||||||||||| | |||||||| || || ||||| ||||||||||| |||||||
Sbjct 608 TCCCAAAAGCCCTCTTCATTAAATACCTTCCTAAGGAGTTTGACATTCTCTGTACTCATC 667
Query 545 CAATGTTTGGACCCGAGAGTGGTAAGCATTCTTGGTCTGGCTTACCCTTTGTTTATGATA 604
||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 668 CAATGTTTGGACCTGAGAGTGGTAAGCATTCTTGGTCTGGCTTGCCCTTTGTCTACGATA 727
Query 605 AGGTGAGAATCGGAGACACAGCTTCTAGACACGAGAGGTGTGAGAAGTTTCTAAGAGTTT 664
||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||
Sbjct 728 AGGTGAGAATCGGAGACGCAGCTTCAAGACAAGAGAGGTGTGAGAAGTTTCTAAGAATTT 787
Query 665 TTGAGAATGAAGGTTGCAAGATGGTTGAAATGAGCTGTGAGAAGCATGATTATTACGCAG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TTGAGAATGAAGGTTGCAAGATGGTTGAAATGAGCTGTGAGAAGCATGATTATTACGCAG 847
Query 725 CTGGGTCGCAATTCGTGACGCATACTATGGGAAGGGTTTTGGAGAAATACGGAGTTGAGT 784
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 848 CTGGATCGCAATTCGTGACGCATACTATGGGAAGGGTTTTGGAGAAATATGGAGTTGAGT 907
Query 785 CTTCTCCGATTAACACTAAAGGTTATGAGACGTTGTTGGATTTGGTGGAGAACACATCGA 844
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 CTTCGCCGATTAACACCAAAGGTTATGAGACGTTGTTGGATTTGGTGGAGAACACATCGA 967
Query 845 GTGATAGCTTTGAGCTTTTCTATGGTTTGTTTATGTATAACCCGAATGCTCTTGAAGAGT 904
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 968 GTGATAGCTTTGAGCTTTTCTACGGTTTGTTTATGTATAATCCGAATGCTCTTGAACAGT 1027
Query 905 TAGAGAGATTGGATATGGCTTTTGAATCTGTCAAGAAGGAGTTGTTTGGGAGATTGCATC 964
| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||
Sbjct 1028 TGGAGAGATTGGATATGGCTTTTGAGTCTGTTAAGAAGGAGCTGTTTGGGAGATTACATC 1087
Query 965 AGCAATACAGGAAGCAAATGTTTGGTGGGGAGGTTCAATCGCCAAAGAAAACTGAGCAGA 1024
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1088 AGCAATACAGGAAGCAAATGTTTGGTGGGGAGGTTCAATCGCCCAAGAAAACTGAGCAGA 1147
Query 1025 AATTGCTTAACGATGGTGGTGTTGTTCCGATGAAAGATATatcatcatcatcatcatc 1082
||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1148 AATTGCTCAATGATGGTGGTGTTGTTCCTATGAATGATATATCATCATCATCATCATC 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54216588600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5