BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920476
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15730.1 | Symbols: | Cobalamin biosynthesis CobW-like prot... 2063 0.0
AT1G80480.1 | Symbols: PTAC17 | plastid transcriptionally activ... 1051 0.0
> AT1G15730.1 | Symbols: | Cobalamin biosynthesis CobW-like protein
| chr1:5407401-5409987 REVERSE LENGTH=1531
Length=1531
Score = 2063 bits (1117), Expect = 0.0
Identities = 1304/1393 (94%), Gaps = 17/1393 (1%)
Strand=Plus/Plus
Query 1 TACCTTAAAACCCTAATAACAATGGCGACGCAGTTCAGACTCGATACAGCCACGACTTTC 60
|||||| ||||||||||||||||||||||| ||| | |||||| | |||||||||||||
Sbjct 31 TACCTT-GAACCCTAATAACAATGGCGACGCTGTTGAAACTCGACATAGCCACGACTTTC 89
Query 61 CTTGCTTTCAACGTTCCCCGAGCTAATATCTCGTTGAACCACCGGTTCGCTTCTGCTAGG 120
|||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 90 CTTGCTTTCATCGTTCCCCGAGCTAATACCTCCTTGAACCATCGGTTCGCTTCTGCTAGG 149
Query 121 CTCAGGAGAGCCACAGTTTCCCTCAGAACGAAGCCGTCGTCGTTCTATTCCGCGGCGGTT 180
||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 150 CTCAGTACAGCCACAGTTTCCCTCAGAACGAAGTCGTCATCGTTCTATTCCGCGGCGCTT 209
Query 181 TACTCTGACAGCCGTCGGAGATTCCAATCCGCCGTTGCCTATGATTCCTCGCTCGCCGTT 240
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 210 TACTCTGACAGCCGTCGGAGATTCCACTCCGCCGTTGCCTCTGATTCCTCGCTCGCCGTT 269
Query 241 ATGGAT-ACTGATGAT-TCCTTCGATGTTTCCACTGAGAATTTGCAGGACAATCGAATTC 298
| ||| | ||| ||| | |||||||||| ||| ||||| ||||| |||||||||||||
Sbjct 270 GTAGATGA-TGAAGATAT-CTTCGATGTTGCCAGTGAGATTTTGCCCGACAATCGAATTC 327
Query 299 CGGCCACTATTATCACCGGGTTCCTGGGTTCTGGTAAGACGACATTGCTAAACCATATAT 358
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 328 CGGCCACTATAATCACCGGGTTCCTGGGCTCTGGTAAGACAACATTGCTAAACCATATAT 387
Query 359 TGACGGGAGATCATGGGAAGCGCATAGCCGTGATTGAGAATGAGTTTGGTGAAGTCGACA 418
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 388 TGACGGGAGATCATGGGAAGCGCATAGCCGTGATTGAGAACGAGTTTGGTGAAGTCGACA 447
Query 419 TTGATGGATCGCTTGTGGCAGCTAAAACTGCTGGAGCAGAGGATATAATGATGCTTAACA 478
|||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 448 TTGATGGATCACTTGTGGCAGCTCAAACTGCGGGAGCGGAGGATATAATGATGCTTAACA 507
Query 479 ATGGCTGTCTGTGTTGTACTGTTAGGGGTGATCTTGTGAGGATGATTTCTGAATTGGTTC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 508 ATGGCTGTCTGTGTTGTACTGTTAGGGGTGATCTTGTGAGGATGATTTCTGAAATGGTCC 567
Query 539 AGACCAAGAAAGGAAGGTTCGACCATATCGTTATTGAGACAACAGGATTGGCGAACCCTG 598
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 568 AGACCAAGAAAGGAAGGTTCGACCATATCGTTATTGAGACGACAGGATTGGCTAACCCTG 627
Query 599 CCCCGATTATTCAAACTTTTTATGCTGAGGATGAAATTTTCAATGATGTCAAACTGGATG 658
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 628 CTCCGATTATTCAAACTTTCTATGCTGAGGATGAAATTTTCAATGATGTCAAGCTGGATG 687
Query 659 GAGTTGTCACTCTGGTTGATGCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTG 718
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GGGTTGTCACTCTGGTTGATGCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTG 747
Query 719 AAGGCTATGTCAATGAGGCAGTAGAACAAATAGCTTACGCAGATCGTATCATAATTAACA 778
||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||
Sbjct 748 AAGGCTATGTCAATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACA 807
Query 779 AGACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AGACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAA 867
Query 839 ACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 ACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTG 927
Query 899 GAATTGGAGGGTTTGATCTAGAAAGAATTGAGAGCTCTGTGAATGAAAAAGATCACGAGG 958
||||||||||||||||||||||||||||||| ||||||||||||||| |||| | || |
Sbjct 928 GAATTGGAGGGTTTGATCTAGAAAGAATTGAAAGCTCTGTGAATGAAGAAGAGAAAGAAG 987
Query 959 GTCATGATGATCATCACCATGAACATGACCATGGTCATGACTGCCATGATCACAACAATG 1018
|| || | |||| | ||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 988 ATCGCGAGGGTCATGA---TGATCATCACCATGGTCATGACTGCCATGATCACCACAATG 1044
Query 1019 AGCATGA---T---CATGAACACGAGCA-C-C-ATTCTCATGATCACACTCATGACCCTG 1069
||||||| | |||||||||||||| | | |||||||||||||||| ||||||||||
Sbjct 1045 AGCATGAGCATGAGCATGAACACGAGCATCACCATTCTCATGATCACACCCATGACCCTG 1104
Query 1070 GTGTTGCTTCAGTCAGTATAGTTTGCGAAGGAGATTTAGACCTCGAGAAGGCTAACATGT 1129
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1105 GTGTTGGTTCAGTCAGTATAGTTTGCGAAGGAGACTTAGACCTCGAGAAGGCTAACATGT 1164
Query 1130 GGCTTGGGGCGCTATTGTACCAACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCT 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GGCTTGGGGCGCTATTGTACCAACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCT 1224
Query 1190 CCGTCCAAGACATGGACGAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGAT 1249
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 CCGTACAAGACATGGACGAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGAT 1284
Query 1250 CACCAGACCGGTTATGGAGAAAAGATGAGACAAGAACCAACAAGATCGTTTTCATCGGCA 1309
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1285 CACCTGACCGGTTATGGAGAAAAGATGAAACAAGAACCAACAAGATTGTTTTCATCGGCA 1344
Query 1310 AGAGTTTGAACCGGGAGGAGTTAGAGATGGGTTTTAGAGCTTGCTTGATTTGATTATAGG 1369
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1345 AGAATTTGAACCGGGAGGAGTTAGAGATGGGTTTCAGAGCTTGCTTGATTTGATTATAGG 1404
Query 1370 AACAAATATATAA 1382
| ||||||| |||
Sbjct 1405 ACCAAATATTTAA 1417
> AT1G80480.1 | Symbols: PTAC17 | plastid transcriptionally active
17 | chr1:30258076-30260679 REVERSE LENGTH=1640
Length=1640
Score = 1051 bits (569), Expect = 0.0
Identities = 953/1136 (84%), Gaps = 36/1136 (3%)
Strand=Plus/Plus
Query 247 ACTGATGATTCCTTCGATGTTTCCACTGAGAATT-TG-CAGGACAATCGAATTCCGGCCA 304
||||| |||| | | ||||| ||||| || ||| | || || || || |||||||| |
Sbjct 329 ACTGAAGATT-C-T-GATGTCACCACTAAG-ATTCCGCCA-GATAACCGGATTCCGGCTA 383
Query 305 CTATTATCACCGGGTTCCTGGGTTCTGGTAAGACGACATTGCTAAACCATATATTGACGG 364
||||||||||||| || |||| ||||| ||||| |||||||| || |||||| ||||
Sbjct 384 CTATTATCACCGGTTTTTTGGGCTCTGGCAAGACAACATTGCTGAATCATATACTGACCA 443
Query 365 GAGATCATGGGAAGCGCATAGCCGTGATTGAGAATGAGTTTGGTGAAGTCGACATTGATG 424
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 444 GAGATCATGGGAAGCGAATAGCCGTGATTGAGAATGAGTTTGGTGAAGTTGACATTGATG 503
Query 425 GATCGCTTGTGGCAGCTAAAACTGCTGGAGCAGAGGATATAATGATGCTTAACAATGGCT 484
| || ||||| || ||||| || |||||| |||||||| ||||||| ||||||||||
Sbjct 504 GGTCACTTGTTGCTTCTAAATCTATTGGAGCTGAGGATATTGTGATGCTCAACAATGGCT 563
Query 485 GTCTGTGTTGTACTGTTAGGGGTGATCTTGTGAGGATGATTTCTGAATTGGTTCAG-ACC 543
| || ||||| |||||||||||||||||||| ||||||||| ||||| || || |||
Sbjct 564 GCCTTTGTTGCACTGTTAGGGGTGATCTTGTCAGGATGATTGGAGAATTAGT-CAATACC 622
Query 544 AAGAAAGGAAGGTTCGACCATATCGTTATTGAGACAACAGGATTGGCGAACCCTGCCCCG 603
|||||||||| |||||| ||||| || || ||||| ||||||||||| ||||| || |||
Sbjct 623 AAGAAAGGAAAGTTCGATCATATAGTCATAGAGACTACAGGATTGGCAAACCCGGCACCG 682
Query 604 ATTATTCAAACTTTTTATGCTGAGGATGAAATTTTCAATGATGTCAAACTGGATGGAGTT 663
||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 683 ATTATCCAAACCTTTTATGCCGAGGAAGAAATTTTCAATGATGTCAAACTGGACGGTGTT 742
Query 664 GTCACTCTGGTTGATGCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTGAAGGC 723
|| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 743 GTTACTCTAGTTGATGCTAAGCATGCTCGTTTGCATCTAGACGAGGTCAAACCCGAAGG- 801
Query 724 TAT-GTCAATGAGGCAGTAGAACAAATAGCTTACGCAGATCGTATCATAATTAACAAGAC 782
| | ||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 802 TGTTGTCAATGAGGCTGTTGAACAAATAGCTTATGCAGATCGTATCATAGTTAACAAGAC 861
Query 783 TGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAAACAG 842
|||||||||||||||| | ||| ||| ||| ||| | || || |||||||| ||||||||
Sbjct 862 TGATCTTGTTGGTGAGGCGGAATTAGGTTCGGTGGTACAACGCATAAAGACAATAAACAG 921
Query 843 CATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTGGAAT 902
||||||||| |||| ||| |||||||| || || |||||||| |||||||||||||||||
Sbjct 922 CATGGCTCAGATGACGCGAACAAAGTACGGAAATGTTGACTTAGATTATGTTCTTGGAAT 981
Query 903 TGGAGGGTTTGATCTAGAAAGAATTGAGAGCTCTGTGAATGAAAAAGATCACG-AGGGTC 961
|||||| ||||||||||| ||||| || ||||||||||||||| | ||| | | || ||
Sbjct 982 TGGAGGTTTTGATCTAGAGAGAATCGAAAGCTCTGTGAATGAAGATGATAAGGGAGA-TC 1040
Query 962 ATGATGATCATC-ACCATGAACATGACCATGGTCATGAC--TG-CCATGATCA-CAACAA 1016
| ||||||| | ||||||| ||| | |||| ||| || || ||| || || || ||
Sbjct 1041 ACCATGATCA-CGACCATGATCATCATCATGATCACAACCATGACCACGACCATCATCAC 1099
Query 1017 TGA-GCATG-ATCATGAACA-CGAGCACCATTCTCATGATCACACTCATGA-CCCTGGTG 1072
| | ||| | ||||| || | | || ||||||||||||||||| ||||| ||| ||||
Sbjct 1100 C-ACG-ATGGA-CATGATCATC-ATCATCATTCTCATGATCACACCCATGATCCC-GGTG 1154
Query 1073 TTGCTTCAGTCAGTATAGTTTGCGAAGGA-GATTTAGACCTCGAGAAGGCTAACATGTGG 1131
|| |||||||||||||||||||||||||| | || |||||| |||||||| |||||||||
Sbjct 1155 TTTCTTCAGTCAGTATAGTTTGCGAAGGAAGCTT-AGACCTTGAGAAGGCAAACATGTGG 1213
Query 1132 CTTGGGGCGCTATTG-TACCAACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCTC 1190
|| ||| || || || | |||| ||||| || |||||||||||||||||| |||||||
Sbjct 1214 CTCGGGACGTTACTGATGG-AACGCAGTGAAGACATCTACAGAATGAAAGGTCTCCTCTC 1272
Query 1191 CGTCCAAGAC-ATGGACGAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGAT 1249
||||| || ||||| ||||||||||||||||| ||||| ||||| |||||| ||||||
Sbjct 1273 GGTCCAC-ACCATGGAGGAGAGATTCGTGTTTCAAGGAGTCCATGACATATTTCAAGGAT 1331
Query 1250 CACCAGACCGGTTATGGAGAAAAGATGAG-ACAAGAACCAACAAGATCGTTTTCATCGGC 1308
|||||||| |||||||| ||| ||| ||| | | || || |||||||||||||| ||
Sbjct 1332 CACCAGACAGGTTATGGGGAAGAGAGGAGGAGA-GAGTGAATAAGATCGTTTTCATTGGT 1390
Query 1309 AAGAGTTTGAACCGGGAGGAGTTAGAGATGGGTTTTAGAGCTTGCTTGATTTGATT 1364
|||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1391 AAGAATTTGAACAGGGAGGAGTTAGAGAAGGGTTTTAAAGCTTGCTTGATTTGATT 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68071939020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5