BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920485
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 667 0.0
AT1G15780.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 241 7e-63
> AT1G15790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G15780.1);
Has 170 Blast hits to 94 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5438299-5440030
REVERSE LENGTH=771
Length=771
Score = 667 bits (361), Expect = 0.0
Identities = 522/596 (88%), Gaps = 26/596 (4%)
Strand=Plus/Plus
Query 13 AGAGAACC--CATCATGG--AC-ACAGGTGACTGGAAAACTCAATTTCCATCTGATTCAC 67
|||||||| || ||||| || ||||| ||||||| ||||||||||||||||| |||||
Sbjct 40 AGAGAACCAACACCATGGACACAACAGGAGACTGGAGAACTCAATTTCCATCTGCTTCAC 99
Query 68 GCTCGAGAGTTGTCAATAAAATAATGGAAACTCTGATAAAGCAACTTCCATTTATTGGAG 127
|||||||| | |||||||| ||||||||||| | | | |||||||||||||||||| ||
Sbjct 100 GCTCGAGAATCGTCAATAAGATAATGGAAACACAGTTGAAGCAACTTCCATTTATTAGAC 159
Query 128 CAGAGGGAATTAACGAGCTGAGGAAAATTGCTGTCAGATTTGAGGACAAAATATTCAGCA 187
||||||||| ||||||||| ||||||||||| |||||||||||||| ||| |||||| ||
Sbjct 160 CAGAGGGAACTAACGAGCTTAGGAAAATTGCAGTCAGATTTGAGGAGAAACTATTCAACA 219
Query 188 ATG-CTATCAATCAGACTGAGTACCTTCGTCAAATATCCCTGAAGATGCTGAGTATGGAG 246
||| || | |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 220 ATGCCTCT-AATCAGACTGAGTACCTTCGTCAAATATGTATGAAGATGCTGAATATGGAG 278
Query 247 ACTAAATCACAAAATGCAGCTGGTTCTTCCTCATCTGTCTTTGCCGCTCATGACAACAGC 306
|||||||||||||||||||||||||||||||| | | | | | |||| |||| |
Sbjct 279 ACTAAATCACAAAATGCAGCTGGTTCTTCCTC--C-G-C--T---G---ATGATAACACC 326
Query 307 CCACCGTTGGTTCCAGAGCCTTCTCTTCCGAACAAAGAACCTGATGTGAATTCAAGTGAC 366
|||||||||||||||||||||||| |||||||||| ||||||| ||||| | |||||
Sbjct 327 CCACCGTTGGTTCCAGAGCCTTCTGTTCCGAACAATGAACCTGCCGTGAACACTGGTGAC 386
Query 367 TGGAGAACTCAACAGCCACCGGATTCACGCCAGAAGAATATCTACGCGTTATTGGAAACA 426
||||||||||||||||||| |||||||||||||||||||||| | || |||||||| |||
Sbjct 387 TGGAGAACTCAACAGCCACAGGATTCACGCCAGAAGAATATCAATGCTTTATTGGACACA 446
Query 427 CTAAAGAAAAATGTTCCATACTCTGGGAAAGAAGGAATTGACGAGCTCATGAGAATTGCT 486
|||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 447 CTAAAGAAAATTGTTCCACATTCTGGGAAAGAAGGAATTGACGAGCTCATGAGAATTGCT 506
Query 487 GTCAGCTTCGAGGAGTTGATTTTCAACACTGCTATAAGCCAGTTTCAGGAGGATTACCTT 546
|||||||| |||||||||||||||||| ||||||||| |||| | |||||||||||
Sbjct 507 GTCAGCTTAGAGGAGTTGATTTTCAACTCTGCTATAAACCAG-----G-AGGATTACCTT 560
Query 547 GGCAAAATATCCTTAAAGATGCGGACTATGTAAGAGGGCAACTA-AGCCATCAAGT 601
||||| |||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 561 GGCAAGATATCCTTAAAGATGCGGACTATGTAAGAGGGCAACTATAGTCAACAAGT 616
> AT1G15780.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G10440.1);
Has 103701 Blast hits to 43153 proteins in 1828 species: Archae
- 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531;
Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source:
NCBI BLink). | chr1:5430183-5436412 REVERSE LENGTH=4338
Length=4338
Score = 241 bits (130), Expect = 7e-63
Identities = 229/276 (83%), Gaps = 10/276 (4%)
Strand=Plus/Plus
Query 24 CATGGACACAGGTGACTGGAAAACTCAATTTCCATCTGATTCACGCTCGAG-AG-TTGTC 81
|||||| ||||||||||||| ||| ||||| ||| ||||||| || || || || | |||
Sbjct 115 CATGGATACAGGTGACTGGAGAACGCAATTGCCACCTGATTCTCG-TC-AGAAGATCGTC 172
Query 82 AATAAAATAATGGAAACTCTGATA-AAGCAACTTCCATTTAT-TGGAGCAGAGGGAATTA 139
|| || ||||||||||| || | | ||||| ||||||||| | ||| ||||||||||||
Sbjct 173 AACAAGATAATGGAAACACT-AAAGAAGCACCTTCCATTT-TCCGGACCAGAGGGAATTA 230
Query 140 ACGAGCTGAGGAAAATTGCTGTC-AGATTTGAGGACAAAATATTCAGCAATGCTATCAAT 198
||||||| |||| |||||| | | ||||| ||||| ||||| |||||| |||| | ||
Sbjct 231 ACGAGCTCAGGAGAATTGCAG-CTAGATTCGAGGAGAAAATTTTCAGCGGTGCTCTTAAC 289
Query 199 CAGACTGAGTACCTTCGTCAAATATCCCTGAAGATGCTGAGTATGGAGACTAAATCACAA 258
|||||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 290 CAGACTGATTACCTTCGGAAAATATCAATGAAGATGCTGACAATGGAGACTAAATCACAA 349
Query 259 AATGCAGCTGGTTCTTCCTCATCTGTCTTTGCCGCT 294
|||||||||||||||||| || || || |||||||
Sbjct 350 AATGCAGCTGGTTCTTCCGCAGCTATCCCTGCCGCT 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28934868672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5