BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920487
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15810.1 | Symbols: | S15/NS1, RNA-binding protein | chr1:5... 1690 0.0
> AT1G15810.1 | Symbols: | S15/NS1, RNA-binding protein | chr1:5444418-5446564
FORWARD LENGTH=1631
Length=1631
Score = 1690 bits (915), Expect = 0.0
Identities = 1215/1351 (90%), Gaps = 55/1351 (4%)
Strand=Plus/Plus
Query 1 TCCTTAGGAGC-AGCAAAATCATGGCGCTTCATCTCGCCAGACGCCACCAACGGTTACCA 59
||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 58 TCCTTAGGAGCAACCAAAATCATGGCGCTTCATCTCGCCAGACGCCACCAAAGGTTACCA 117
Query 60 TCAAACCCATCTTTGATTCGATTTTTCTCCAATTCCTCATCGGACTCACCTCCCCAAGTC 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 118 TCAAACACATCTTTGATTCGATTTTTCTCCAATTCCTCATCGGACTCACCTCCCCAATTC 177
Query 120 TTGAACACACCGGTTGAAAATCCCTCTCAGTCACCATCTTCTCCGCCTCCGTCGGACTCC 179
|||| ||||||||||||| || ||||||||||||||||||||| | ||||| |
Sbjct 178 ACGAACGCACCGGTTGAAAAACCGTCTCAGTCACCATCTTCTCCGTCACCGTC--A---- 231
Query 180 TCGTACTCTTCTCCG-TCATTCGACATCAAGACCACTCTGAAACAGAAATTACAGAACCA 238
| ||||||||||| || ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 232 --G-ACTCTTCTCCGATC-TTCGACATCAAGAACACTCTGAAACTGAAATTACAGAACCA 287
Query 239 GCAGGAGCAAGGAAGGAAACCATTC-ACCAGATCCGATACCCAATCTCAGAGTCGCGGAT 297
|||||||||||||||||||||||| || ||||||||| | |||||||||| ||||||||
Sbjct 288 GCAGGAGCAAGGAAGGAAACCATTTGAC-AGATCCGATGCACAATCTCAGAATCGCGGAT 346
Query 298 CGACTAGTTTCGCCCAAAACCAGTCACGTGTGTCTTCACATGATTTGGGGAAGAACCTCG 357
||||||||||| |||||||| | || | | | ||||| ||||
Sbjct 347 CGACTAGTTTCTCCCAAAAC---T----TG-G---------G----G---AAGAATCTCG 382
Query 358 CCAAGTTTCAGCGGAGATCCACCGTTCCACCTCCGAGGGATTCAGGTGGCGTACAGTCTC 417
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 383 CCAAGTTTCAGCGGAGATCCACCGTTCCACCTCCGAGGGATTCAGGCGGCGTACAGCCTC 442
Query 418 CGCCGCAGATTTCCTTAGAGGGCCTCTATAAGCAGAGCACTGCAACAAGCTCATCGGATC 477
|| | | |||||||||| ||||||||||||||||||| ||||||||| |||||||||||
Sbjct 443 CGTCTTATATTTCCTTAGCGGGCCTCTATAAGCAGAGCGCTGCAACAAACTCATCGGATC 502
Query 478 CTAGAAATTGGAAAGCTCAGGGTTTCAATTCGAGCACCGTAAGTGAAACTTTAAAGAATT 537
||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 503 CTAGAAATTCGAAAGCTCAGGGTTTCAATTCAAACACTGTAAGTGAAACTTTAAAGAATT 562
Query 538 TGAGGACGCAGACTAACACTTCAAACAACATTGGGAAGAAAGGAGGGTTTTTAGGAAGTT 597
|||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 563 TGAGGACGCAGATTAACACTTCAAACAACATGGGGAAGAGAGGAGGGGTTTTAGGAAGTT 622
Query 598 TCAAAAGCACTACTGCAGGAGAAGCATTGCCCATATCCCTGTTCGAAACAAAAATGGACG 657
|||| |||||| | ||| ||||||||||| | || ||||||||||||| ||||||| |
Sbjct 623 TCAAGAGCACTG-T--AGGTGAAGCATTGCCAAAATACCTGTTCGAAACACAAATGGATG 679
Query 658 AGAGGGAGGGAAGGGAAGGTGAAACGGAGGAGATGATGACGGAGTTCTTAACGTTTTATA 717
|||| ||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 680 AGAGTAAGGGAAGTGAAGGTGAAACAGAGGAGGCGATGACGGAGTTCTTAATGTTTTATA 739
Query 718 ACGAAGAAGAATTAGGTGACAAACTAAGGATGCTTAGGCCTGAAGGAGAGAAAGAAGAAG 777
||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||
Sbjct 740 ACGAAGAAGAATTAGGTGAGAAACTAAGGACGCTTAGGCCAGAAGGAGAGAAAAAAGAAG 799
Query 778 GATGGTTCTCATTGCAGGAGTTGAATCAGAGGTTGGTCAAGCTAAGGCAAGTGGAAGAGA 837
|||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 800 GATGGTTCTCATTGGAGGAGTTGAATCAGAGATTGGTTAAGCTAAGGCAAGTTGAAGAGA 859
Query 838 AAGAGGCACAATATCGGACTAAGAATTTTGCGACA-CTCAGAAATGTTATTTCATCAATT 896
||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||
Sbjct 860 AAGAGGCACAATATCGGACTAAGAACTTTGCC-CAACTCAGAAATGTTATTTCATCATTT 918
Query 897 AAGAATGACAATGACaaaaaaaaTGAAGTTTTTTCCCAGCAGAATATCACCATTATGGGC 956
|||||||| ||| | ||||| | ||||||||||||| || |||||||||||
Sbjct 919 AAGAATGAGAATT-C--------TGAAGCTAGTTCCCAGCAGAATGTCGCCATTATGGGC 969
Query 957 CATTTGGGTGGTATCCCTGAATACAAGCTTCTTCCTCCTAAAGAGGATCTAGTTGACACT 1016
||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 970 CATCTCGGTGGTATCCCTGAATACAAGCTTCTTCCTCCAAAAGAGGATCTAGTTGACACT 1029
Query 1017 TATTTCCACCCAGATAACATGTCCTCTGCGGAGAAGATGAAAATTGAGCTCACGAAAGTC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1030 TATTTCCACCCAGATAACATGTCCTCTGCGGAGAAGATGAAAATTGAGCTCTCGAAAGTC 1089
Query 1077 AGGGAAGAATTCAAAATGTCAGAATCAGATTGTGGTTCTGCACGTGTGCAAGTGGCACAA 1136
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1090 AGGGAAGAGTTCAAGATGTCAGAATCAGACTGTGGTTCTGCACGTGTGCAAGTGGCACAA 1149
Query 1137 CTCACTACTAAGATCAAGCATTTATCCTCAAGTTTACACAAAAAGGACAAGCATTCACGG 1196
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1150 CTCACTACTAAGATCAAGCATTTATCCTCAAGTTTGCACAAAAAGGACAAGCATTCGCGG 1209
Query 1197 AAGGGACTTTTAGGAATGGTGCAGAAACGGAAGAAACTGTTGAAATATCTAAGACGAACT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 AAGGGACTTTTAGGAATGGTGCAGAAACGGAAGAAACTGTTGAAATATCTAAGACGAACT 1269
Query 1257 GACTGGGATTCTTACTGCCTTGTCCTGTCAAAACTCAGCCTTCGTGACAACCCGGAATAC 1316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1270 GACTGGGATTCTTACTGCCTTGTCCTGTCAAAACTCAGCCTTCGTGACAACCCGGATTAC 1329
Query 1317 AAGCT-CTAAGCTTTAT-GCGTTAGAGACCC 1345
||| | ||||||||||| || |||||||||
Sbjct 1330 AAG-TGCTAAGCTTTATTGCACTAGAGACCC 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5