BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920489
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15830.1 | Symbols: | unknown protein; Has 165982 Blast hit... 917 0.0
> AT1G15830.1 | Symbols: | unknown protein; Has 165982 Blast hits
to 57214 proteins in 2459 species: Archae - 263; Bacteria
- 44622; Metazoa - 55751; Fungi - 10656; Plants - 17613; Viruses
- 2527; Other Eukaryotes - 34550 (source: NCBI BLink).
| chr1:5448726-5450177 FORWARD LENGTH=1452
Length=1452
Score = 917 bits (496), Expect = 0.0
Identities = 754/874 (86%), Gaps = 35/874 (4%)
Strand=Plus/Plus
Query 364 TTCCCGGAGCTCCGCCACCTAAAAGA---GGAGGAGGAGAACCGGTGATTCCCGGAGCTC 420
|||| ||||||||||| || |||||| |||||||| ||||| ||||||||||||||||
Sbjct 404 TTCCTGGAGCTCCGCCGCCAAAAAGAGGTGGAGGAGGTGAACCAGTGATTCCCGGAGCTC 463
Query 421 CGCCACCCAATAGAGGAGGAGGAGGTGAACCGGTTATTCCCGGAGCGCCACCGCCTAGAA 480
|||| || || |||||||||||||||||||| || ||||||||||| || ||||||| ||
Sbjct 464 CGCCGCCAAAAAGAGGAGGAGGAGGTGAACCAGTGATTCCCGGAGCTCCGCCGCCTAAAA 523
Query 481 GAGGAGGAGGAGGTGAACCTGTGATTCCCGGAGCTCCGCCTCCTAAAAGAGGAGGAGGAG 540
|||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 524 GAGGAGGAGGGGGTGAACCAGTGATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGGG 583
Query 541 GTGAACCGGTAAATCCCGGAGCGCCACCACCTAAAAGAGGAGGAGGAGATGAGCCGGTGA 600
||||||| || | ||||||||| || || ||||||||||||||||||| ||| || ||||
Sbjct 584 GTGAACCAGTGATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGAGGTGAACCAGTGA 643
Query 601 TTCCCGGAG-TGCCACCGCCTAATAGAGGAGGAGGAGGGGAATCGA-TTAGTCCTGGAGC 658
||||||||| | ||||||||||| |||||||||||||||||| | | | | ||| |||||
Sbjct 644 TTCCCGGAGCT-CCACCGCCTAAAAGAGGAGGAGGAGGGGAA-CCAGTGATTCCCGGAGC 701
Query 659 CCCGCCACTTAAAAGAGGGGGAGGAGGTGAATCGGTGGTTCCGGGAGAGCCTCCGCCTAA 718
|| | | ||||||||| |||||||||||||| |||||||| |||| ||| || |||||
Sbjct 702 GCCACTGCCTAAAAGAGGCGGAGGAGGTGAATCTGTGGTTCCCGGAGCGCCACCACCTAA 761
Query 719 AAGAGGAGGCGGTGTCATTGTAAACGGTGGCTGTGAAACCGAGCCACCAGGTAGTGGCGG 778
|||||||||||||||||||||||| |||||||||||||||| ||| |||||||| || ||
Sbjct 762 AAGAGGAGGCGGTGTCATTGTAAATGGTGGCTGTGAAACCGTGCCGCCAGGTAGAGGTGG 821
Query 779 TGGTGGCGATAAAACTAAAGGAAGGGGTGGTGAGGGAAGGGAGGAAGATAATGGTGGCGG 838
|||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 822 TGGTGGTGATAAAACTAATGGAAGAGGTGGTGAGGGAAGAGAGGAAGATAATGGTGGTGG 881
Query 839 AAGCGGCGCAGAAGGGGGAGGAAGGGGTAGGACTGGAACAGGAGAAGGCGTCACGGATGG 898
||| ||||||||||| ||||||||||||| | | || |||||||||||||| |
Sbjct 882 AAGAGGCGCAGAAGGTGGAGGAAGGGGTA-G-C----ACCGGAGAAGGCGTCAC--A--- 930
Query 899 TGATGGTGGTGGTAGAACGGGAAGTAAAGGTGGCCATGGAGGGAGTATAAAAATCGGCGT 958
||||||||||||||||| |||| |||||| ||| |||||||||||||||||||||||||
Sbjct 931 -GATGGTGGTGGTAGAACAGGAAATAAAGGCGGCAATGGAGGGAGTATAAAAATCGGCGT 989
Query 959 AGGGACAAATGGCGTAAC-GG-G--A--GGCGG---TGAAGCTGGTGCTGGGACGCAAGT 1009
|||||||||||| | || || | | ||||| ||||||||||||||||| ||||||
Sbjct 990 AGGGACAAATGGTATCACCGGCGGTACTGGCGGCGGTGAAGCTGGTGCTGGGATGCAAGT 1049
Query 1010 TATGCAAGGCTGCGGAGGAGGTGGTGCCGGGGCTG-TGACACAAGTAATGCAAGGCTGCG 1068
|||||||||||| |||||||| ||| ||||||||| | ||||||||||||||||||||||
Sbjct 1050 TATGCAAGGCTGGGGAGGAGGCGGTTCCGGGGCTGCT-ACACAAGTAATGCAAGGCTGCG 1108
Query 1069 GAGGAGGCGGA-GCCGGAGCTGGAACACAAGTAATGCAAGGCTGCGGAGGAGGTGGTGCC 1127
||||||| | | || || ||| |||||||||||||||||||| |||||||| |||||
Sbjct 1109 GAGGAGGTG-ATGCTGGGGCTATTACACAAGTAATGCAAGGCTGGGGAGGAGGCGGTGCT 1167
Query 1128 GGGGCTGTGACACAAGTAATGCAAGGTTGCGGAGG---CGATGGTGGTGGCGATGGGGGA 1184
|||||||||||||||||||||||||| |||||||| || ||||||||| ||||| |||
Sbjct 1168 GGGGCTGTGACACAAGTAATGCAAGGCTGCGGAGGAGGCGGTGGTGGTGGAGATGGTGGA 1227
Query 1185 GGTGAGCAAGGAATGGGAATTGGCGGTGGCGGTG 1218
|||| |||||||| ||||| || || |||||||
Sbjct 1228 GGTGGGCAAGGAACCGGAATCGGAGGAGGCGGTG 1261
Score = 634 bits (343), Expect = 0.0
Identities = 532/621 (86%), Gaps = 22/621 (4%)
Strand=Plus/Plus
Query 121 GCGGTTGTCCGATGCCTATATCGGGTGGGAGATTGTCTACCGGTGGAGGAGATCCGGTGG 180
|||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||| |||
Sbjct 62 GCGGTTGTCCGATGACTATATCCGGTGGGAGATTGTTTACTGGTGGAGGAGATCCCGTGA 121
Query 181 TTATAACCGGCGTTGGA-A--AT-T----GTGCAGCTGGCGGCGTTAAAGTAGACCGGTC 232
|||||||| | || ||| | | | |||||||||| |||||||| || ||||||||
Sbjct 122 TTATAACC-G-GTGGGAGATTGTCTACAGGTGCAGCTGGTGGCGTTAATGTTGACCGGTC 179
Query 233 TAAAGGCGGAGGAATGAGGAAAACTGGAGATGGCGGTGGTGATCCAGTAGGT-ATATCAG 291
|||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 180 TAAAGGCGGAGGAAGGAGGAAAACTGGAGATGGTGGTGGTGATCCAGTA-GTAATATCAG 238
Query 292 GCGGCGAAAACCATGCTATTGGTGGCATGGGCGGGACGTCTGCGACTAGCGGCGGAGGAG 351
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 GCGGCGAAAACCATGCTAGTGGTGGCATGGGCGGGACGTCTGCGACTAGAGGCGGAGGAG 298
Query 352 ATGTGCTAGC-AGTTCCCGGAGCTCCGCCACCTAAAAGAGGAGGAGGAGAACCGGTGATT 410
|| | | | |||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 299 GTGAACCGGTGA-TTCCCGGAGCTCCGCCACCTAATAGAGGAGGAGGAGAAACGGTGATT 357
Query 411 CCCGGAGCTCCGCCACCCAATA-GAGGAGGAGGAGGTGAACCGGTTATTCCCGGAGCGCC 469
|||||||| || || || | || |||||||||| |||||||| | ||||| ||||| ||
Sbjct 358 CCCGGAGCACCACCGCCTA-TAAGAGGAGGAGGGGGTGAACCAGCGATTCCTGGAGCTCC 416
Query 470 ACCGCCTAGAAGAGGAGGAGGAGGTGAACCTGTGATTCCCGGAGCTCCGCCTCCTAAAAG 529
||||| | |||||| |||||||||||||| |||||||||||||||||||| || |||||
Sbjct 417 GCCGCCAAAAAGAGGTGGAGGAGGTGAACCAGTGATTCCCGGAGCTCCGCCGCCAAAAAG 476
Query 530 AGGAGGAGGAGGTGAACCGGTAAATCCCGGAGCGCCACCACCTAAAAGAGGAGGAGGAGA 589
|||||||||||||||||| || | ||||||||| || || ||||||||||||||||| |
Sbjct 477 AGGAGGAGGAGGTGAACCAGTGATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGGGG 536
Query 590 TGAGCCGGTGATTCCCGGAG-TGCCACCGCCTAATAGAGGAGGAGGAGGG-GAATCGATT 647
||| || ||||||||||||| | || |||||||| ||||||||||| ||| ||| | | |
Sbjct 537 TGAACCAGTGATTCCCGGAGCT-CCGCCGCCTAAAAGAGGAGGAGG-GGGTGAACC-AGT 593
Query 648 -AGTCCTGGAGCCCCGCCACTTAAAAGAGGGGGAGGAGGTGAATCGGTGGTTCCGGGAGA 706
| ||| ||||| ||||| | ||||||||| |||||||||||| | ||| |||| ||||
Sbjct 594 GATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGAGGTGAACCAGTGATTCCCGGAGC 653
Query 707 GCCTCCGCCTAAAAGAGGAGG 727
|| |||||||||||||||||
Sbjct 654 TCCACCGCCTAAAAGAGGAGG 674
Score = 344 bits (186), Expect = 1e-93
Identities = 291/341 (85%), Gaps = 9/341 (3%)
Strand=Plus/Plus
Query 390 GGAGGAGGAGAACCGGTGATTCCCGGAGCTCCGCCACCCAATAGAGGAGGAGGAGGTGAA 449
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 292 GGAGGAGGTGAACCGGTGATTCCCGGAGCTCCGCCACCTAATAGAGGAGGAGGAGA--AA 349
Query 450 CCGGTTATTCCCGGAGCGCCACCGCCTAGAAGAGGAGGAGGAGGTGAACCTGTGATTCCC 509
| ||| ||||||||||| |||||||||| |||||||||||| |||||||| | ||||||
Sbjct 350 C-GGTGATTCCCGGAGCACCACCGCCTATAAGAGGAGGAGGGGGTGAACCAGCGATTCCT 408
Query 510 GGAGCTCCGCCTCCTAAAAGAGGAGGAGGAGGTGAACCGGTAAATCCCGGAGCGCCACCA 569
||||||||||| || |||||||| |||||||||||||| || | ||||||||| || ||
Sbjct 409 GGAGCTCCGCCGCCAAAAAGAGGTGGAGGAGGTGAACCAGTGATTCCCGGAGCTCCGCCG 468
Query 570 CCTAAAAGAGGAGGAGGAGATGAGCCGGTGATTCCCGGAG-TGCCACCGCCTAATAGAGG 628
|| |||||||||||||||| ||| || ||||||||||||| | || |||||||| |||||
Sbjct 469 CCAAAAAGAGGAGGAGGAGGTGAACCAGTGATTCCCGGAGCT-CCGCCGCCTAAAAGAGG 527
Query 629 AGGAGGAGGG-GAATCGATT-AGTCCTGGAGCCCCGCCACTTAAAAGAGGGGGAGGAGGT 686
|||||| ||| ||| | | | | ||| ||||| ||||| | ||||||||| ||||| |||
Sbjct 528 AGGAGG-GGGTGAACC-AGTGATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGGGGT 585
Query 687 GAATCGGTGGTTCCGGGAGAGCCTCCGCCTAAAAGAGGAGG 727
||| | ||| |||| |||| || |||||||||||||||||
Sbjct 586 GAACCAGTGATTCCCGGAGCTCCGCCGCCTAAAAGAGGAGG 626
Score = 335 bits (181), Expect = 8e-91
Identities = 313/375 (83%), Gaps = 15/375 (4%)
Strand=Plus/Plus
Query 1005 CAAGTTATGCAAGGCTGCGGAGGAGGTGGTGCCGGGGCTGTGACACAAGTAATGCAAGGC 1064
||||| |||||||||||||||||||||| ||| |||||| | ||||||||||||||||||
Sbjct 1090 CAAGTAATGCAAGGCTGCGGAGGAGGTGATGCTGGGGCTATTACACAAGTAATGCAAGGC 1149
Query 1065 TGCGGAGGAGGCGGAGCCGGAGCTG-GAACACAAGTAATGCAAGGCTGCGGAGGAGGTGG 1123
|| ||||||||||| || || |||| | ||||||||||||||||||||||||||||| ||
Sbjct 1150 TGGGGAGGAGGCGGTGCTGGGGCTGTG-ACACAAGTAATGCAAGGCTGCGGAGGAGGCGG 1208
Query 1124 TGCCGG-GGCTG-TGACACAAGTAATGCAAGGTTGCGGAGGCGATGGTGGTGGCGATGGG 1181
|| || || | || | || |||||| |||| || | || |||| |||
Sbjct 1209 TGGTGGTGGA-GATGGTGGAGGTGG-GCAAGGAACCGGAATCG--GA-GGAGGCGGTGGT 1263
Query 1182 GGAGGTGAGCAAGGAATGGGAATTGGCGGTGGCGGTGATGCTTCTACACAAGTAATACAC 1241
|| ||||||||||| ||| |||||||||| |||||| ||| ||||||||||| ||||
Sbjct 1264 GG---TGAGCAAGGAACCGGAGTTGGCGGTGGAGGTGATACTTGTACACAAGTAACACAC 1320
Query 1242 GGTGGTGGTGGTGAACCGTTGACTACGATTGGAGGCGGTGGTGGTGAGCAGGGTGTGACA 1301
||||||||||||| ||||||||||| ||| |||||||| ||||||||||| ||||||||
Sbjct 1321 GGTGGTGGTGGTGCACCGTTGACTATGATCGGAGGCGGAGGTGGTGAGCAAGGTGTGACT 1380
Query 1302 ACAGGGAATGACGGTGGCGGCGGAAGGGGAAGAGGTGGTGGTAAGATCCCCGGAGGAGGC 1361
|||| ||||||||| ||||||||||||||||||||||||||| || ||||||| |||
Sbjct 1381 ---GGGAGTGACGGTGGGGGCGGAAGGGGAAGAGGTGGTGGTAAGGTCGCCGGAGGTGGC 1437
Query 1362 AAGAAAGGGTTTTGA 1376
|||||||||||||||
Sbjct 1438 AAGAAAGGGTTTTGA 1452
Score = 270 bits (146), Expect = 2e-71
Identities = 199/224 (89%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 364 TTCCCGGAGCTCCGCCACCTAAAAGAGGAGGA---GGAGAACCGGTGATTCCCGGAGCTC 420
|||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||
Sbjct 548 TTCCCGGAGCTCCGCCGCCTAAAAGAGGAGGAGGGGGTGAACCAGTGATTCCCGGAGCTC 607
Query 421 CGCCACCCAATAGAGGAGGAGGAGGTGAACCGGTTATTCCCGGAGCGCCACCGCCTAGAA 480
|||| || || |||||||||||||||||||| || ||||||||||| |||||||||| ||
Sbjct 608 CGCCGCCTAAAAGAGGAGGAGGAGGTGAACCAGTGATTCCCGGAGCTCCACCGCCTAAAA 667
Query 481 GAGGAGGAGGAGGTGAACCTGTGATTCCCGGAGCTCCGCCT-CCTAAAAGAGGAGGAGGA 539
||||||||||||| ||||| |||||||||||||| || || ||||||||||| ||||||
Sbjct 668 GAGGAGGAGGAGGGGAACCAGTGATTCCCGGAGCGCC-ACTGCCTAAAAGAGGCGGAGGA 726
Query 540 GGTGAACCGGTAAATCCCGGAGCGCCACCACCTAAAAGAGGAGG 583
|||||| | || ||||||||||||||||||||||||||||||
Sbjct 727 GGTGAATCTGTGGTTCCCGGAGCGCCACCACCTAAAAGAGGAGG 770
Score = 137 bits (74), Expect = 2e-31
Identities = 100/113 (88%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 1050 CAAGTAATGCAAGGCTGCGGAGGAGGCGGAGCCGGAGCTGGAACACAAGTAATGCAAGGC 1109
||||| ||||||||||| ||||||||||| |||| |||| ||||||||||||||||||
Sbjct 1045 CAAGTTATGCAAGGCTGGGGAGGAGGCGGTTCCGGGGCTGCTACACAAGTAATGCAAGGC 1104
Query 1110 TGCGGAGGAGGTGGTGCCGGGGCTGTGACACAAGTAATGCAAGGTTGCGGAGG 1162
||||||||||||| ||| |||||| | ||||||||||||||||| || |||||
Sbjct 1105 TGCGGAGGAGGTGATGCTGGGGCTATTACACAAGTAATGCAAGGCTGGGGAGG 1157
Score = 126 bits (68), Expect = 5e-28
Identities = 90/101 (89%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 978 GGAGGCGGTGAAGCTGGTGCTGGGACGCAAGTTATGCAAGGCTGCGGAGGAGGTGGTGCC 1037
||||| ||||| ||||| ||| || ||||| ||||||||||| |||||||| |||||
Sbjct 1108 GGAGGAGGTGATGCTGGGGCTATTACACAAGTAATGCAAGGCTGGGGAGGAGGCGGTGCT 1167
Query 1038 GGGGCTGTGACACAAGTAATGCAAGGCTGCGGAGGAGGCGG 1078
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GGGGCTGTGACACAAGTAATGCAAGGCTGCGGAGGAGGCGG 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68774746650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5