BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920490
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00420.2 | Symbols: | Double-stranded RNA-binding domain (D... 826 0.0
> AT4G00420.2 | Symbols: | Double-stranded RNA-binding domain
(DsRBD)-containing protein | chr4:181323-184387 REVERSE LENGTH=1052
Length=1052
Score = 826 bits (447), Expect = 0.0
Identities = 553/604 (92%), Gaps = 7/604 (1%)
Strand=Plus/Plus
Query 17 TCAACGATGTATCTTACTCCTCCAGAGTCTTCACCAAATCCCACCTCTTCCTCCTCTGTG 76
||||||||| ||||| ||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 279 TCAACGATGGATCTTCCTCCTCCAGAGTCTTCATCAAATCCCATATCTTCCTTCTCTGTG 338
Query 77 AGATGCGAAAAGAGGATGATGCTACAGAGATGCGAAAGTGGGTTTAAGTTAAGGAAGCTG 136
| | | ||||||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 339 -GCT-C-AAAAGAGGATGTTGCTACAGAGATGCGAAAGTAAGTTTAAGATAAGGAAGCTG 395
Query 137 AATGATGCTGTTGAAGAAGACAATGTCACGCAGATGGAGTCAAACATCACACATGAGAAA 196
|| ||| |||| ||||||||||||||||||||||||||| ||||| | |||| ||||||
Sbjct 396 AACGATACTGTCGAAGAAGACAATGTCACGCAGATGGAGCCAAACTTTACACTTGAGAAC 455
Query 197 ACTCTTGTTTCCGAACCAGAAGCAGGTTTGGGGCCTCAAACAACAGAGCCCACAACTGAA 256
||||||||||||||||||||||||| |||| ||||||| ||||| |||||||| ||||||
Sbjct 456 ACTCTTGTTTCCGAACCAGAAGCAGATTTGAGGCCTCACACAACTGAGCCCACTACTGAA 515
Query 257 GAAGAGACTCAAAGATCGTCAGCCAAATCACAGTTGTATAAGTTCTGTAGTGTGAGGCAT 316
||||| ||||| ||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 516 GAAGAAACTCAGAGATCTTCAGCCAAATCACAGTTGTATAATTTATGTAGTGTGAGGCAT 575
Query 317 TGGAAAGCACCAGTGTATGAGTGTATCGCCGAGGGTCCTTGCCATATGATATTATTTACA 376
|||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 576 TGGAAAGCACCACTGTATGAGTATATCGCCGAGGGTCCTTGCCATATGAAAATATTTACA 635
Query 377 GTCAAAGCTACGGTTGAAATGAAGGAGGATTCTCGGATAACGGTTTTGGAGTGTTTTGGG 436
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 GGCAAAGTTACGGTTGAAATGAAGGAGGATTCTCGGATAACGGTTTTGGAGTGTTTTGGG 695
Query 437 AATCCACAGCACAAGAAGAAGATAGCAGCTGAGCAGGCAGCAGAAGCAGCGCTTTGGTAT 496
||||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 696 AATCCACAGTACAAGAAGAAAATCGCAGCTGAGCAGGCAGCAGAAGCAGCACTTTGGTAT 755
Query 497 CTTAAGAATGTGGGTCT-TACCCTTCAAACAGAGAAAGCTTCTGGTCATAAAGGGCAGA- 554
||||||||||||||| | ||||||||||||||||||||||||||||| |||||| | ||
Sbjct 756 CTTAAGAATGTGGGT-TATACCCTTCAAACAGAGAAAGCTTCTGGTCGTAAAGGACGGAG 814
Query 555 TAAAACCGATATCGAAGATGATGGGAATAGGTGAACCCGTGTAATGATCTTTGCCAGTTA 614
|||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 815 TAAA-CCGATATCGAAGATGATGGTAACAGGTGAACCCGTGTAATGATCTTTGCCAGTTA 873
Query 615 GAAT 618
||||
Sbjct 874 GAAT 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5