BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920494
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15870.1 | Symbols: | Mitochondrial glycoprotein family pro... 1134 0.0
> AT1G15870.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr1:5457084-5458429 FORWARD LENGTH=982
Length=982
Score = 1134 bits (614), Expect = 0.0
Identities = 721/773 (93%), Gaps = 6/773 (1%)
Strand=Plus/Plus
Query 1 GTGTTATTCGTCCCTCTGTCAATGGCTCGCCTCCTCAGATGTCTGAGAAGAAGTGTGATA 60
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 49 GTGTTCTTCGTCTCTCTGTCAATGGCTCGCCTCCTCAGATGTCTGAGAAGAAGTTTCATA 108
Query 61 TTAAGTTCATC-ACCTTCGATTTCGTACCGAAACCCTAGAATATGTGTCCAGTCAAATCA 119
|| |||||||| | |||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 109 TTTAGTTCATCGA-CTTCGATTGCGTACAGAAACCCTAGAATATGTGTTCAGTCAAATCA 167
Query 120 AAACCCTAGTTTCTTAATTAGCCGTAAGTTTCTCAGTTCGGGGAGTTACATATCAGAAAT 179
|| | || |||||||| ||||| ||||||||||| |||||||||||| | ||||||||
Sbjct 168 AAGCTATATTTTCTTAAGCAGCCGCAAGTTTCTCAGCTCGGGGAGTTACGTTTCAGAAAT 227
Query 180 GC-GAAAATCAGCTTTCCAAGGTAACATTCTCCGATTAATTCGTTCT-GAGATTCAGTCC 237
|| || || |||||||| | |||||||||||| |||||||||||| | ||||||||||||
Sbjct 228 GCGGAGAA-CAGCTTTCGAGGGTAACATTCTCAGATTAATTCGTT-TGGAGATTCAGTCC 285
Query 238 GAGCTCGATCACTCGCCTATTCTTAAGCTTGAGGACAGGTTTGGTCCATTTACCGTGGAT 297
||||| |||||||||||||||||| ||| ||| || || ||||||||||| || ||||||
Sbjct 286 GAGCTTGATCACTCGCCTATTCTTCAGCCTGAAGAGAGTTTTGGTCCATTCACGGTGGAT 345
Query 298 GAGCGGCCAGGAGAGCAGTGGATTAGCTTGAGAAGAAATTTTGGGGACAAGGAAGATATT 357
||||| || || |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 346 GAGCGTCCGGGGGAGCAGTGGATTAGCTTGAGAAGAAAATTTGGGGAGAAGGAAGATATT 405
Query 358 AAGATTGAAGCAACCATGTTTGATGGATCAGTTCCATCATCAAAATCTACTAGCAGCGAC 417
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 406 AAGATTGAAGCAACCATGTTTGATGGATCAGTTCCATCATCAAAATCTACTACCAGCGAC 465
Query 418 CCTCAAGATGTTCAGCTTCATATTACTTTCATTGTCAACATCTCTAAGGGTGATGGTGAG 477
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CCTGAAGATGTTCAGCTTCATATTACTTTCATTGTCAACATCTCTAAGGGTGATGGTGAG 525
Query 478 ACCTTAGAGATCATGTGTTCTGCTTGGCCTGATACTATACAGATCTCCAAGTTCTTTGTT 537
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 526 ACCTTAGAGATCATGTGTTCTGCTTGGCCTGATACCATACAGATCACCAAGTTCTTTGTT 585
Query 538 CGTAAAAGCAGCAAGAACTCACCAAATGCCTATATTGGACCAGAATTCCAGGAAATGGAA 597
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 586 CGTAAAAGCAGCCAGAACTCACCAAATGCCTATATTGGACCTGAATTCCAGGAAATGGAA 645
Query 598 GATGAACTTCAAGACTCGGTTTATAGATTTTTGGAGGAAAGAGGTATAAGTGATGGTCTT 657
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 646 GATGAACTTCAAGACTCGGTTTATCGATTTTTGGAGGAAAGAGGTATAAGTGATGATCTT 705
Query 658 GCTGAGTTCTTGCATCAGTACATGAAGAACAAAGATAAAGCTGAGTACATTAGATGGATG 717
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 706 GCTGAGTTCTTGCATCAGTACATGAAGAACAAAGATAAAGCTGAGTATATTAGATGGATG 765
Query 718 GAGACTGTTAAATCTTATGTTGAGCAAAAATAAAATCTTCTGCTTACCACATT 770
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 766 GAGACTGTTAAATCTTATGTTGAGCAAAAATAAAATCTTCTGCCGACCACATT 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5