BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920497
Length=2249
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43740.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 706 0.0
AT5G43730.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 263 6e-69
AT1G51480.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 224 3e-57
> AT5G43740.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr5:17564738-17568802 FORWARD LENGTH=2866
Length=2866
Score = 706 bits (382), Expect = 0.0
Identities = 949/1212 (78%), Gaps = 81/1212 (7%)
Strand=Plus/Plus
Query 1058 AGATTATGAAATAGGGAAGGAGAAATTGATAAAATATTGGATATGCGAAGGATTTATCGA 1117
||||| ||||||| ||||||||| | |||| |||| |||||||||||||||||||| |
Sbjct 1315 AGATTCTGAAATACCGAAGGAGAAGTGGATAGAATACTGGATATGCGAAGGATTTATAAA 1374
Query 1118 TGGAAGCAGAAATGACGATGGAGCTGA-CAACCAAGGTTATGATATAATCGGTTTACTAG 1176
| || |||| |||| ||||||| | | |||||| |||||||||||||| || || |||
Sbjct 1375 TCCAAACAGATATGAAGATGGAGGT-ACCAACCATGGTTATGATATAATTGGCTTGTTAG 1433
Query 1177 TTCATGCCCATCTATTGA-TGGATGGTGTACTCACATTCACCGTGAAAATGCATGATGTT 1235
||| ||| ||| | |||| || || ||| ||||||| || ||| ||||||||||||||
Sbjct 1434 TTCGTGCACATTTGTTGATTGAAT-GTGAACTCACAGACAACGTTAAAATGCATGATGTG 1492
Query 1236 ATACGCGAGATGGGTCTTTGGATAGCA-TCTAATTTCGGGAAAC-AGAGAGAAACATTTT 1293
||||| ||||||| |||||||||| | ||| | ||||| |||| | | ||||||| | |
Sbjct 1493 ATACGTGAGATGGCTCTTTGGATA-AATTCTGACTTCGGAAAACAACA-AGAAACAATCT 1550
Query 1294 GTGTTAGATCTGGTGCGCAGT-TACGTGA-AATACCAAAAGACATCAATTGGGA-ACTTG 1350
|||| | ||||||||| || | ||||| | ||||| || |||||||||||||| | |||
Sbjct 1551 GTGTGAAATCTGGTGCTCA-TGTACGT-ATGATACCGAATGACATCAATTGGGAGA-TTG 1607
Query 1351 TGAGAAGGATATC-ACTAATGAGCAATCAGATTTCGGAGATATCTTG-CAGTTGCAACTG 1408
|||||| ||| || || | | | ||||||| | |||||||||| | ||| ||| ||
Sbjct 1608 TGAGAACGATGTCTTTTACT-TGTACTCAGATTAAGAAGATATCTTGTC-GTTCCAAATG 1665
Query 1409 CTCCAACCTTTCGACCCTATTATTCC-AGAATAATA---AGTTGGTGGATATTTCAGGTG 1464
| |||||||||| ||||| ||| ||| || |||| | ||||||| | |||||| |
Sbjct 1666 CCCCAACCTTTCAACCCTTTTAATCCTAG-ATAACAGGTTGTTGGTGAAAATTTCAAAT- 1723
Query 1465 A-ATTCTTTCGGTTTATGCCAGCACTTGTGGTCTTGGATCTATCGAG-GAA-CTCAATTC 1521
| ||||||||||||||||||| |||||||||||||||||| || | || ||| | ||
Sbjct 1724 AGATTCTTTCGGTTTATGCCAAAACTTGTGGTCTTGGATCTTTC-TGCAAACCTCGA-TC 1781
Query 1522 TT-TCTAGGTTGCCGGAAGAAATTTCTAACTTGGGTTCCTTGCAATATCTCAACT-TATC 1579
|| | || ||||||||||||||||||||| | |||||| ||||||||||||| | ||||
Sbjct 1782 TTAT-TAAATTGCCGGAAGAAATTTCTAACCTAGGTTCCCTGCAATATCTCAA-TATATC 1839
Query 1580 A-TACACAGGAATGAAATCGTTACCAGATGGTTTGAAGGAGATGA--AACGACTAATCGA 1636
| | |||||| || |||||| |||||| |||| ||||| || ||| || ||||||| |
Sbjct 1840 ACT-CACAGGGATAAAATCGCTACCAGTTGGTCTGAAGAAGTTGAGGAA--ACTAATCTA 1896
Query 1637 CTTGAATTTGGAGTTTACTCGTG-AGCTTGAAAGTATTGTTGGGATAGCAACAAGTC-TA 1694
||||||| ||||||| ||| ||| | | || ||| |||||||||||||| ||| | ||
Sbjct 1897 CTTGAATCTGGAGTTCACTGGTGTA-CATGGGAGTCTTGTTGGGATAGCAGCAA-CCTTA 1954
Query 1695 CCAAATCTTCAAGTGTTGAGATTATATTGTTCCAGAGTTTGTGTTGATGACATATTAATG 1754
|||||||| |||||||||| ||| | || |||| | |||| |||||||||||||||||||
Sbjct 1955 CCAAATCTGCAAGTGTTGAAATTCTTTTATTCCTGTGTTTATGTTGATGACATATTAATG 2014
Query 1755 AAAGAGCTACAACTCTTGGAGCACGTGGAGATTGTGACAGCAACCATAGAGGATGCCGTG 1814
|| || ||||| |||||||||| || ||||| | ||||||| | || |||||| | |
Sbjct 2015 AAGGAATTACAAGACTTGGAGCACTTGAAGATTTTAACAGCAAACGTAAAGGATGTCACG 2074
Query 1815 ATTTTGAAAAATATACAAGGAG-TGGACCGATTAGCAAGCAGTATTCGAGGTTTATGTCT 1873
|||||| ||| |||||||||| | ||| |||| || || ||||||||| ||||||||||
Sbjct 2075 ATTTTGGAAAGGATACAAGGAGAT-GACAGATTGGCGAGTAGTATTCGAAGTTTATGTCT 2133
Query 1874 CAGCA-ATATGTCAGCACC-GGTGGTAATATTAAACAGGGTAGTTCTGGGAGGTCTTCAA 1931
|| | |||||||| |||| || |||||||||| || | ||| ||||||||||||||||
Sbjct 2134 -AGAAGATATGTCAACACCTCGT-GTAATATTAAGCACGATAGCTCTGGGAGGTCTTCAA 2191
Query 1932 CGCCTTACTATT-TGGAACTCCAAAATCTCTGAGATAAAGATAGATTGGGAAAGCAAAGA 1990
| ||| | ||| | || | ||| || || ||||||| |||||||||||||||||||||
Sbjct 2192 CAACTTGCAATTCT-GATGTGCAACATATCCGAGATAAGGATAGATTGGGAAAGCAAAGA 2250
Query 1991 AAG-AGGG-G--------ATC-TA-A----T--ATGTACAGGTTCTCCAGGCTTCAAGCA 2032
||| |||| | | | | | | || ||||||||||||||||||||||||
Sbjct 2251 AAGAAGGGAGCTTTCACCAACGGAGATTCTTCCATCTACAGGTTCTCCAGGCTTCAAGCA 2310
Query 2033 ACTCTCCGCTGTACATATAGTCC-GTTTGGAAGGTCCAACCGATTTGACATGGCTATTGT 2091
||||||| |||| ||||| || ||| |||||| | || |||||| ||||||| || |
Sbjct 2311 ACTCTCCACTGTTTATATAAACCAGTT-GGAAGGGCAAAGGGATTTGTCATGGCTGTTAT 2369
Query 2092 ATGCTCAAAGTCTCAGGATTCTATCTGTGT-CGGGTC-C-ATCAAGTATAGAAGAAAGAA 2148
||||||||| ||| | || ||| |||| | |||| | | ||| |||||||||| ||
Sbjct 2370 ATGCTCAAAATCTAAAGAAACTAGAAGTGTGCTGGTCACCA-CAA--ATAGAAGAAATAA 2426
Query 2149 TAAATAGAG-AGAAAGAAATGAGTATTAGGACGTTGCATCCAGATATTGTTGTGCC-TTT 2206
|||||| || |||||| ||||| ||||| | |||||| |||||||||||| || |||
Sbjct 2427 TAAATA-AGGAGAAAGGAATGAATATTACCAAACTGCATCGAGATATTGTTGTTCCATTT 2485
Query 2207 GGAAAAGCTGGA 2218
|| || |||||
Sbjct 2486 GGGAAC-CTGGA 2496
> AT5G43730.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr5:17560179-17562929 FORWARD LENGTH=2751
Length=2751
Score = 263 bits (142), Expect = 6e-69
Identities = 283/348 (81%), Gaps = 22/348 (6%)
Strand=Plus/Plus
Query 723 AAGATAGGAGTTCCACCTCCAACCCAAGAAAATGGATCCAA-ATTAGTTTTTACGACTCG 781
|||||||||||||||||||||| | |||||||||||| || | ||||||| || || ||
Sbjct 896 AAGATAGGAGTTCCACCTCCAAGTCGAGAAAATGGATCGAAGA-TAGTTTTCACCACACG 954
Query 782 TTCTAAGGAAGTTTGCAAAG-ACATAG-AGGTTG--ATG-ATATAATGGAAGTTG-CTTG 835
||| |||||||||||| ||| |||| | | | || | | | |||| |||||| | ||
Sbjct 955 TTCAAAGGAAGTTTGC-AAGCACAT-GAAAGCTGACAAGCAGATAA---AAGTTGAC-TG 1008
Query 836 TTTGTCACCGGATGAAGCCTGGGAGTTATTTCAG-CAAAAAGTTGGAGAAAACCCTA-TA 893
||||||||| |||||||| ||||| || |||| | | | ||||||| | | | || ||
Sbjct 1009 TTTGTCACCAGATGAAGCGTGGGAATTGTTTC-GACTCACTGTTGGAG-ATATCATATTA 1066
Query 894 AAGAGCCATCATGATTTTCTCC-CAGTTGCAAGAAAAATTGCTGCAAAATGTTGTGGCTT 952
| ||||||||| ||| ||| || || ||||||||| | ||||||||||||| ||||||
Sbjct 1067 AGGAGCCATCAAGATATTC-CCGCACTTGCAAGAATAGTTGCTGCAAAATGCCATGGCTT 1125
Query 953 GCCACTTGCGCT-ATGTGTCATTGGAAAAGCCATGGCATGTAAAGAGACTGTACAAGAAT 1011
||||||||| || | ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1126 GCCACTTGCACTCA-ATGTCATTGGCAAAGCCATGGTATGTAAAGAGACTGTACAAGAAT 1184
Query 1012 GGCGTCATGCGATTCATGTTCTCAACTCGTCTAGCCATGAGTTTCCAG 1059
|||||||||||||| ||||||| || ||| || |||| |||||||||
Sbjct 1185 GGCGTCATGCGATTAATGTTCTGAATTCGCCTGGCCACAAGTTTCCAG 1232
Score = 241 bits (130), Expect = 3e-62
Identities = 241/292 (83%), Gaps = 18/292 (6%)
Strand=Plus/Plus
Query 75 TGTGGCTGCTTATTT-GGTGATGGGAATTACATTCACATGATGGAGGCAAATCTTGAGGC 133
||||||||||| ||| | ||| | || ||||||||| |||||||| ||||||| || ||
Sbjct 140 TGTGGCTGCTT-TTTAAGCGATAGCAACTACATTCACTTGATGGAGTCAAATCTCGATGC 198
Query 134 TCTGGAGAAAACTATGCAAGAACTTGAAG-A-GAGACGAGATGATCTTTTAAG-AAGAGT 190
|||| ||||||||||| |||||||| ||| | | | ||||||||||| || || ||||||
Sbjct 199 TCTGCAGAAAACTATGGAAGAACTT-AAGAATG-GGCGAGATGATCTGTT-AGCAAGAGT 255
Query 191 TGT-CGTTGACGAAGATAAAGGTTTGCAACGGCTTGCTCAAGTCCAA-GGATGGTTTTCA 248
| | | | || |||||||||||||||||||||||||||| |||| || |||||| |||||
Sbjct 256 T-TCCATAGAAGAAGATAAAGGTTTGCAACGGCTTGCTCTAGTC-AACGGATGGCTTTCA 313
Query 249 AGGGTACAAAGTGTTGAGTCTC-AAGTCAAAGATTTGCTCGAGGCTA-GATCAACTC-AA 305
|||||||||| |||||| || | || |||| ||| |||| ||||||| | |||| || ||
Sbjct 314 AGGGTACAAATTGTTGAATC-CGAATTCAAGGATCTGCTTGAGGCTATG-TCAA-TCGAA 370
Query 306 ACTAAAAGATTGTGTCTGCTTGGATATTGCTCTAAGAAGTGCATACCAAGCT 357
||| |||||||||||| |||||||||| ||| || | |||||| ||||||
Sbjct 371 ACTGGAAGATTGTGTCTATTTGGATATTGTTCTGAGGATTGCATATCAAGCT 422
> AT1G51480.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr1:19090847-19094306 REVERSE LENGTH=2826
Length=2826
Score = 224 bits (121), Expect = 3e-57
Identities = 283/357 (79%), Gaps = 27/357 (8%)
Strand=Plus/Plus
Query 718 TGAACAAGATAGGAGTTCCACCTCCAACCCAAGAAAATGGATCCAA-ATTAGTTTTTACG 776
|||||||||||||||||||||||||||| | ||||||||| | || || |||||| ||
Sbjct 1067 TGAACAAGATAGGAGTTCCACCTCCAACTCGTGAAAATGGAGCGAAGAT-AGTTTTCACC 1125
Query 777 ACTCGTTCTAAGGAAGTTTGCAAAG-ACAT-AGAGGTTGA--TG-ATATAATGGAAGTTG 831
| ||||| |||||||||| ||| | |||| | || | || || | |||| |||||
Sbjct 1126 AAACGTTCAAAGGAAGTTTCCAA-GTACATGAAAGCT-GACATGCAAATAA---AAGTTT 1180
Query 832 CTTGTTTGTCACCGGATGAAGCCTGGGAGTTATTTCAGCAAAAA--GTTGGA-GAAAACC 888
||||||||||||| |||||||| ||||| || |||| | || | |||| | || |
Sbjct 1181 CTTGTTTGTCACCAGATGAAGCGTGGGAATTGTTTC-G-AATTACTGTTG-ATGATGTCA 1237
Query 889 CTATAAAG-AGCCATCATGATTTTC-TCCCAGTTGCAAGAAAAATTGCTGCAAAATGTTG 946
||| ||| |||||| | ||| ||| | | | | ||||||| | ||||||||||||||
Sbjct 1238 -TATTAAGCAGCCATGAAGATATTCCTGC-ACTCGCAAGAATAGTTGCTGCAAAATGTCA 1295
Query 947 TGGCTTGCCACTTGCGCT-ATGTGTCATTGGAAAAGCCATGGCATGTAAAGAGACTGTAC 1005
||||||||||||||| || || ||||||||| ||||||||||||||||||||||| |||
Sbjct 1296 TGGCTTGCCACTTGCACTCAT-TGTCATTGGGGAAGCCATGGCATGTAAAGAGACTATAC 1354
Query 1006 AAGAATGGCGTCATGCGATTCATGTTCTCAACTCGTCT--AG-CCATGAGTTTCCAG 1059
||||||||| |||||||||| ||||||| || ||| || || ||| |||||||||
Sbjct 1355 AAGAATGGCATCATGCGATTAATGTTCTGAATTCGCCTGCAGGCCACAAGTTTCCAG 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111595811535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5