BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920502
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion trans... 1005 0.0
AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural resist... 165 8e-40
> AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion transporter
6 | chr1:5481665-5485082 REVERSE LENGTH=2137
Length=2137
Score = 1005 bits (544), Expect = 0.0
Identities = 594/619 (96%), Gaps = 0/619 (0%)
Strand=Plus/Plus
Query 341 AGTTTGTAATGCCTCAGATTTGAGTCCAGAAGATCGAGCAAGTTGCCAAGATTTGGACTT 400
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 865 AGTTTGTAATGCCTCAGATTTGAGTCCAGAAGATCGAGCTAGTTGCCAAGATTTGGACTT 924
Query 401 AAACAAAGCTTCATCTCTGCTGCGGAATGTTGTAGATAAATGGAGCTCAAAGCTATTTGC 460
|||||||||||||| |||||| || || ||||| | ||||||||||||||||||||||||
Sbjct 925 AAACAAAGCTTCATTTCTGCTACGTAACGTTGTGGGTAAATGGAGCTCAAAGCTATTTGC 984
Query 461 AATTGCGTTGCTTGCTTCCGGTCAGAGTTCAACAATAACCGGAACATATGCTGGACAATA 520
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 985 AATTGCGTTGCTTGCTTCCGGTCAGAGTTCAACCATAACCGGAACATATGCTGGACAATA 1044
Query 521 CGTTATGCAGGGGTTTCTTGATTTAAGACTAGAACCATGGCTCAGAAACTTGCTAACAAG 580
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1045 CGTTATGCAGGGGTTTCTTGATTTAAGACTAGAACCATGGCTCAGAAACTTCCTAACCAG 1104
Query 581 ATGCTTGGCTATAATCCCAAGTTTGATCGTTTCTCTGATAGGTGGCTCAGCTGGAGCCGG 640
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1105 ATGCTTGGCTATAATCCCAAGTTTGATCGTTGCTTTGATAGGTGGCTCAGCTGGAGCCGG 1164
Query 641 AAAGTTAATCATCATTGCGTCGATGATCTTATCCTTTGAACTCCCATTTGCTTTAGTACC 700
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1165 AAAGTTAATCATCATTGCCTCGATGATCTTATCCTTTGAACTCCCATTTGCTTTAGTCCC 1224
Query 701 ACTTCTCAAATTCACAAGCAGCAAAACCAAAATGGGCTCACACGCCAATTCACTTGTGAT 760
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1225 ACTTCTCAAATTCACAAGCAGTAAAACCAAAATGGGCTCACACGCCAATTCACTTGTGAT 1284
Query 761 TTCATCTGTGACTTGGATCATTGGTGGACTTATTATGGGTATAAACATTTACTATCTAGT 820
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1285 TTCATCGGTGACTTGGATAATTGGTGGACTTATTATGGGTATAAACATTTACTATCTTGT 1344
Query 821 AAGCAGCTTCATCAAGCTGCTTCTCCATAGTCACATGAACCTTGCAGCCATTGTTTTCTT 880
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1345 AAGCAGCTTCATCAAGTTGCTTCTCCATAGTCACATGAACCTTGTAGCCATTGTTTTCTT 1404
Query 881 AGGACTTCTTGGATTCTCAGGCATTGCCATTTACTTAGCAGCCATTGGTTACCTTGTCCT 940
|||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 1405 AGGAGTTCTTGGATTCTCAGGCATTGCCACTTACTTAGCTGCCATCAGTTACCTTGTCCT 1464
Query 941 CCGTAAAAACAGAGAGTCC 959
|||||||||||||||||||
Sbjct 1465 CCGTAAAAACAGAGAGTCC 1483
Score = 270 bits (146), Expect = 2e-71
Identities = 164/173 (95%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 20 GATGGCGGGTGCAACAGCAAGTGGCGGCAACAGAACTTTCTCAAACTCTCCTCTCATAGC 79
|||||||| || ||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 16 GATGGCGGCTGAAACAGCAAGTGGCAGCAACAGAAGTATCTCAAACTCTCCTCTCATAGA 75
Query 80 AAACTCTGATTCTAATCAGATTGTTGTCCCTGAGAAGAAGAGCTGGAAAAACTTCTTCTC 139
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 76 AAACTCTGATTCTAATCAGATTCTTGTCCCTGAGAAAAAGAGCTGGAAAAACTTCTTCTC 135
Query 140 GTACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACT 192
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 ATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACT 188
Score = 219 bits (118), Expect = 6e-56
Identities = 140/151 (93%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 193 CTTTGGTGATTCAATCTCTCGCTGCAAATCTCGGTGTTGTCACTGGAAAGCACTTAGCAG 252
|||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 264 CTTTAGTGATTCAATCTCTGGCTGCAAATCTTGGTGTTGTCACAGGAAAGCACTTAGCAG 323
Query 253 AGCATTGCAGAACTGAATACTCCAAAGTTCCAAACTTTATGTTATGGGTAGTTGCAGAAA 312
||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 324 AGCATTGTAGAGCTGAGTACTCCAAGGTTCCAAACTTTATGTTATGGGTAGTTGCTGAAA 383
Query 313 TCACTGTAGTAGCTTGTGACATTCCAGAAGT 343
|| |||||||||||||||| |||||||||||
Sbjct 384 TCGCTGTAGTAGCTTGTGATATTCCAGAAGT 414
> AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural resistance-associated
macrophage protein 1 | chr1:30372879-30375696
REVERSE LENGTH=1838
Length=1838
Score = 165 bits (89), Expect = 8e-40
Identities = 131/152 (86%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 193 CTTTGGTGATTCAATCTCTCGCTGCAAATCTCGGTGTTGTCACTGGAAAGCACTTAGCAG 252
||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || || || |
Sbjct 324 CTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGGAAAACATTTGGCTG 383
Query 253 AGCATTGCAGAACTGAATACTCCAAAGTTCCAAACTTTATGTTATGGGTAGTTGCAGAAA 312
|||| || ||| | || |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 384 AGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACTTTATGTTATGGGTCGTTGCTGAAA 443
Query 313 TCACTGTAGTAGCTTGTGACATTCCAGAAGTT 344
| | ||||| ||||||||||| || ||||||
Sbjct 444 TTGCAGTAGTTGCTTGTGACATACCGGAAGTT 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5