BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920509
Length=428
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16022.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 470 6e-132
AT1G16025.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 254 6e-67
> AT1G16022.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:5501396-5501959
REVERSE LENGTH=472
Length=472
Score = 470 bits (254), Expect = 6e-132
Identities = 333/369 (90%), Gaps = 14/369 (4%)
Strand=Plus/Plus
Query 1 TCCACGAAGCTCAGACCAGCAATGGGGACAGTATCTGTTGCATTGGTCTTCCTCTTCCTC 60
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 83 TCCACAAAGCTCAGACCAGCAATGGGGACAGTATCTGTTGCATTGTTCTTCCTCTTCCTC 142
Query 61 GTCTTTCTCTGCTTCCCCATCTCATTAGACTCCCAGAAACTCGATCCAGCGACGAGCTTG 120
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 143 GTCTTTCTCTGCTTCCCCATCTCATTGGACTCCCAGAAACTCGATCCATCGACGAGCTCA 202
Query 121 CTCAACCAAGAACAAGCCCATGCAGAGTTTATAATCAAAGATATA---GGAGGAGAAGAT 177
|||||||||||| ||||||||| || || | ||||||||| ||| || |||||||||
Sbjct 203 CTCAACCAAGAAGAAGCCCATG-AGC-TT-ACAATCAAAGACATAAAAGGTGGAGAAGAT 259
Query 178 AACAAGAGCATCGACATCTTCCGGGCAGGGAAAGGAGGTAATGGAGTTACAGGTGGAAGA 237
||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| |
Sbjct 260 GACAAGAGCATCGACATCTTCCGGGCGGGGAAAGGAGGTCGTGGAGTTACAGGCGGAAAA 319
Query 238 GGCGGCGGAGGCCGGAAAGCATCTCCaaaaaaaaGTAATGCCGCCATGGACCACACG-CC 296
|| || ||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 320 GGTGG---AGGCCGGAAAGCATCTCCAAAAAAACGTAATGCCGCCATGGACCAC-CGGCC 375
Query 297 AACGTT---CTTCTCCGCTGCCTCCATTCTCTTTACTGGTTGTATAATGTTTTCATTAAC 353
| |||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 376 ACCGTTGTTCTTCTCCGCTGCCTCCGTTCTCTTTACTGGTTTTATAATGTTTTCATTAAC 435
Query 354 TTCTTTCAA 362
|||||||||
Sbjct 436 TTCTTTCAA 444
> AT1G16025.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; Has 2 Blast hits to 2 proteins
in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:5501505-5501959 FORWARD LENGTH=342
Length=342
Score = 254 bits (137), Expect = 6e-67
Identities = 239/284 (84%), Gaps = 24/284 (8%)
Strand=Plus/Minus
Query 1 TCCACGAAGCTCAGACCAGCAATGGGGACAGTATCTGTTGCATTGGTCTTCCTCTTCCTC 60
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 260 TCCACAAAGCTCAGACCAGCAATGGGGACAGTATCTGTTGCATTGTTCTTCCTCTTCCTC 201
Query 61 GTCTTTCTCTGCTTCCCCATCTCATTAGACTCCCAGAAACTCGATCCAGCGACGAGCTTG 120
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 200 GTCTTTCTCTGCTTCCCCATCTCATTGGACTCCCAGAAACTCGATCCATCGACGAGA--G 143
Query 121 CTCAACCAAGAACAAGCCCATGCAGAGTTTATAATCAAAGATATAGGAGGAGAAGATAAC 180
| | | | ||| | | | || | | | ||| | || ||||||||| ||
Sbjct 142 CAGAGCTTA---CAATC--A---A-AG---ACA-T-AAA-A----GGTGGAGAAGATGAC 102
Query 181 AAGAGCATCGACATCTTCCGGGCAGGGAAAGGAGGTAATGGAGTTACAGGTGGAAGAGGC 240
||||||||||||||||||||||| |||||||||||| |||||||||||| |||| |||
Sbjct 101 AAGAGCATCGACATCTTCCGGGCGGGGAAAGGAGGTCGTGGAGTTACAGGCGGAAAAGGT 42
Query 241 GGCGGAGGCCGGAAAGCATCTCCaaaaaaaaGTAATGCCGCCAT 284
|| ||||||||||||||||||||||||| |||||||||||||
Sbjct 41 GG---AGGCCGGAAAGCATCTCCAAAAAAACGTAATGCCGCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20308170596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5