BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920528
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1938 0.0
> AT1G16250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:5556989-5559520 FORWARD LENGTH=1824
Length=1824
Score = 1938 bits (1049), Expect = 0.0
Identities = 1168/1224 (95%), Gaps = 13/1224 (1%)
Strand=Plus/Plus
Query 32 CAAGCTCGAGAAGGGGATC-GCACGATACATTTTTACAA--TCTCGCG-AC--TTCGATT 85
|||| |||||||||||||| | | |||||| ||||||| ||||| | || |||| ||
Sbjct 168 CAAGTTCGAGAAGGGGATCAG-AAGATACA--TTTACAATCTCTCGAGTACGATTCGGTT 224
Query 86 CATGGAATCAATAGAGCAGTCTATAATCCCAGGTTTGCCTGATGATTTGGCTTTGAGATG 145
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CATGGAATCAATCGAGCAGTCTATAATCCCAGGTTTGCCTGATGATTTGGCTTTGAGATG 284
Query 146 CATAGCGAAGCTTTCTCATGGCTATCATGGAGTGCTCGAGTGTGTTTCCAGAGGCTGGAG 205
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 285 CATAGCGAAGCTTTCTCATGGGTATCATGGAGTGCTCGAATGTGTTTCCAGAGGCTGGAG 344
Query 206 AGATTTAGTTCGTAGCGTTGATTACTCTTGCTATAAAGCTAGAAATGGATGGTCAGGGAG 265
||||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 345 AGATTTAGTTCGTGGTGCTGATTACTCGTGCTATAAAGCTAGAAATGGATGGTCAGGGAG 404
Query 266 CTGGTTGTTTGTCTTGACAGAACGTTCTAAGAACCAATGGGTTGCTTATGATCCTCAAGC 325
|||||||||||| ||||| |||||||||||||| || |||||||||||||||||| ||||
Sbjct 405 CTGGTTGTTTGTGTTGACGGAACGTTCTAAGAATCAGTGGGTTGCTTATGATCCTGAAGC 464
Query 326 TGATCGATGGCATCCTTTGCCTAGAACTAGGGCTGTTCAAGATGGTTGGCATCATTCTGG 385
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 465 TGATCGATGGCATCCATTGCCTAGAACTAGAGCTGTTCAAGATGGTTGGCATCATTCTGG 524
Query 386 TTTTGCGTGTGTTTGCGTTTCGAATTGTCTTCTTGTGATTGGGGGTTGTTATGCGCCTTC 445
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 525 TTTTGCGTGTGTTTGTGTTTCCAATTGTCTTCTTGTGATTGGGGGTTGTTATGCGCCTTC 584
Query 446 TGTGTCATCGTTTCCTCATCAGAAGCCTGTTGTCACTAAAGATGTCATGCGGTTTGATCC 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GGTGTCATCGTTTCCTCATCAGAAGCCTGTTGTCACTAAAGATGTCATGCGGTTTGATCC 644
Query 506 GTTTAAGAAAGAATGGAAAATGGTTGCTAGTATGCGAACACCACGGACTCACTTTGCTTG 565
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GTTTAAGAAACAATGGAAAATGGTTGCTAGTATGCGAACACCACGGACTCACTTTGCTTG 704
Query 566 CACTGCTGTCTCTGGCAAGGTTTATGTTGCTGGAGGTCGCAATTTAACCCATTCCAGGGG 625
||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 705 TACTTCTGTCTCTGGCAAGGTTTATGTTGCTGGAGGTCGTAATTTAACTCATTCCAGGGG 764
Query 626 AATTCCC-TCTGCTGAGGTTTATGATCCTGTGGCTGATAGATGGGAGGAATTACCAGCAA 684
|| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 765 AA-TCCCATCTGCTGAGGTTTATGATCCTGTCGCTGATAGGTGGGAGGAATTACCAGCAA 823
Query 685 TGCCTAGACCACAGATGGACTGCTCGGGGTTATCGTACAGAGGTTGCTTTCATGTTCTGA 744
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 824 TGCCTAGACCACAGATGGACTGCTCGGGGTTATCGTACAGAGGCTGCTTTCATGTTTTAA 883
Query 745 GTGACCAGGTGGGATTTGCAGAGCAAAATTCATCTGAAGTTTTTAATCCACGAGACATGA 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GTGACCAGGTGGGATTTGCAGAGCAAAATTCATCTGAAGTTTTTAATCCACGAGACATGA 943
Query 805 CTTGGTCCACTGTGGAGGATGTCTGGCCTTTCTCTAGAGCCATGCAGTTTGCTGTTCAGG 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 CTTGGTCCACTGTGGAGGATGTCTGGCCTTTCTCTAGAGCCATGCAGTTTGCTGTTCAGG 1003
Query 865 TGATGAAAAATGATCGAGTGTACACTATTGTAGATTGGGGAGAAAGCTTGATCAAGACTA 924
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1004 TGATGAAAAATGATCGGGTGTATACTATTGTAGATTGGGGAGAAAGCTTGATCAAGACTA 1063
Query 925 GGGATACAGATGAAGGGGAATGGTACAATGTTGGTTCAGTTCCTTCTGTTGTTCTTCCTA 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GGGATACAGATGAAGGGGAATGGTACAATGTTGGTTCAGTTCCTTCTGTTGTTCTTCCTA 1123
Query 985 ATCATCCGAGAGAGTTAGAGGCCTTTGGTTATGGGTTTGCAGCTCTAAGGGATGAGCTCT 1044
||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||
Sbjct 1124 ATCATCCGAGAGAGTTAGAAGCCTTCGGTTATGGGTTTGCAGCTCTAAGGAATGAACTCT 1183
Query 1045 ATGTTATAGGAGGTAAGGTCCTTAAATGGGAAGAATCAGGGGCAGGGAGATTTGACATTG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 ATGTTATAGGAGGTAAGGTCCTTAAATGGGAAGAATCAGGGGCAGGGAGATTTGACATTG 1243
Query 1105 TGAGATTGCCCGTTGTGAGGGTATGTAACCCTTTGGATAGGCCTCTGAATTGGAGAGAGA 1164
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1244 TGAGATTGCCTGTTGTGAGGGTATGTAACCCTTTGGATAGACCTCTGAATTGGAGAGAGA 1303
Query 1165 CCAAACCGATGTGCATTCCAGCCGGTGGGTCCATCATTGGTTGTGTATCCTTGGAAGAAT 1224
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1304 CCAAACCAATGTGCATTCCAGCCGGTGGGTCGATCATTGGTTGTGTATCCTTGGAAGAAT 1363
Query 1225 CTTCTCCGCTTTAAACCAAG-GTG 1247
||||||| | |||| ||||| |||
Sbjct 1364 CTTCTCCCCCTTAA-CCAAGTGTG 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5