BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920557

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16515.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   200    6e-51


> AT1G16515.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:5647549-5647813 
REVERSE LENGTH=265
Length=265

 Score =  200 bits (108),  Expect = 6e-51
 Identities = 193/230 (84%), Gaps = 21/230 (9%)
 Strand=Plus/Plus

Query  77   GTTATCTTCTTGCTCTGATTATATTTGTCTTTCTTAGATTCTTCGCTATTTTCCAGAATA  136
            |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  1    GTTATCTTCTTGCTCTGATTATTTTTGTCTTTCTCAGATTCTTCGCTATTTTCCAGAATA  60

Query  137  -CTGA--AG-TGAATCAAGTCGTCGAGCCCAGAACGACGA-CGCTTT-TGAGGTTTACTG  190
             || |  || | |||| ||||| |||||| |||||| | | || ||| ||||||||| ||
Sbjct  61   TCTCACCAGAT-AATCGAGTCGGCGAGCCAAGAACGGC-ATCG-TTTATGAGGTTTAGTG  117

Query  191  AT-----ACAA----AGGGAGATGTGAATGTAACTTTCTCTGGTGTTTTCTTAGAATCTG  241
            ||     ||||    |||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct  118  ATACACAACAAGCTCAGGGAGATTTTAATCTAACTTTCTCTGGTGTTTTCTTAGAATCTG  177

Query  242  TAATCAAAGATATCACTGATAATC-TTTTGTAGTTT-ATTTTGTATTATT  289
            ||||||||||| || |||| |||  |||| |||||| |||||||| ||||
Sbjct  178  TAATCAAAGATGTCGCTGA-AATTGTTTTTTAGTTTTATTTTGTAGTATT  226



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13522024481


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5