BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920561
Length=2341
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01610.1 | Symbols: CDC48C, emb1354 | cell division cycle 48... 2542 0.0
AT1G16550.1 | Symbols: | pseudogene, putative cell division cy... 1690 0.0
> AT3G01610.1 | Symbols: CDC48C, emb1354 | cell division cycle
48C | chr3:231651-235214 FORWARD LENGTH=2756
Length=2756
Score = 2542 bits (1376), Expect = 0.0
Identities = 1806/2011 (90%), Gaps = 40/2011 (2%)
Strand=Plus/Plus
Query 330 GAGGACGCTGTTTACAGCGAGAAGCTGAGT---CCAAGGTTTGATTTGATCAATGACAGT 386
|||||||| ||||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct 560 GAGGACGCGGTTTATGGCGAGAAGCTGAGTCCGCCGCGGTTTGATCTGATCAATGACAGT 619
Query 387 CTACGAGATAACTATGCCAAGCTAAACAGTTCCTTGAAGAAACCAATTGGGTCGCCTGTG 446
||| |||||||||| || ||| | ||||| |||| ||||||||||||||||||||||| |
Sbjct 620 CTAAGAGATAACTACGCTAAGTTGAACAGCTCCTCGAAGAAACCAATTGGGTCGCCTGCG 679
Query 447 GAGAAGAATGTGGAAGTTGAGACTGTGGGAAACAAAGGTAGAAGTAAGATGGCTACAATG 506
|| |||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||
Sbjct 680 GAAAAGAATGTGGAAGTTGAGACTGTGAGCAACAAAGGTAGAAGCAAGTTGGCTACAATG 739
Query 507 GGGTCGAGAAAGGAGTCTAAAGGCTCTCTTTCCGTCAGTGGAACTACTGGTAATGGTGAA 566
||| | ||||||||| |||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 740 GGGGCCAGAAAGGAGGCTAAAGTTTCTCTTTCCCTCAGTGGAGCTACTGGTAATGGTGAT 799
Query 567 TTGGAAG-TGAAGGGTGA-TAAAGGACCTACTTTTAAAGATTTTGGTGGGATTAGGAAAG 624
||||||| || ||||| | ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 800 TTGGAAGTTG-AGGGT-ACTAAAGGACCTACTTTTAAAGACTTTGGTGGGATTAAGAAAA 857
Query 625 TGTTGGATGAATTGGAGAGGAATGTTTTGTTCCCGATTCTCAATCCTGAACCGTTTAAGA 684
| |||||||||||||||| ||||||| | ||||| |||||||||||||| ||||||||||
Sbjct 858 TATTGGATGAATTGGAGATGAATGTTCTATTCCCCATTCTCAATCCTGAGCCGTTTAAGA 917
Query 685 AGATCGGAGTTAAGCCACCAAGCGGGATTCTATTCCATGGACCACCTGGCTGTGGAAAGA 744
|||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 918 AGATTGGAGTGAAGCCACCAAGTGGGATTCTATTTCATGGACCACCTGGCTGTGGGAAGA 977
Query 745 CCAAGTTGGCTAATGCTATAGCCAATGAAGTTGGTGTTCCGTTTTATAAGATTTCAGCTA 804
| |||||||| ||||| || |||||||||| ||||||||||||||||||||||||||| |
Sbjct 978 CTAAGTTGGCCAATGCCATTGCCAATGAAGCTGGTGTTCCGTTTTATAAGATTTCAGCCA 1037
Query 805 CAGATGTGGTTTCTGGTGTCTCTGGTGCTTCTGAAGAGAATATTAGAGAGCT-TTTCTCT 863
|||| ||| |||||||||| ||||||||||||||||||||||| |||||||| ||| |||
Sbjct 1038 CAGAGGTGATTTCTGGTGTTTCTGGTGCTTCTGAAGAGAATATCAGAGAGCTCTTT-TCT 1096
Query 864 AAAGCGTATAGGACTGCGCCTTCCATTGTGTTTATCGATGAGATTGATGCGATTGGATCA 923
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1097 AAAGCATATAGGACTGCGCCTTCGATTGTGTTTATCGATGAGATTGATGCGATTGGTTCA 1156
Query 924 AAGAGGGAAAATCAGCAAAGGGAGATGGAGAAGCGGATTGTAACGCAATTATTGACTTGT 983
||||| || ||||||||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct 1157 AAGAGAGAGAATCAGCAAAGAGAGATGGAGAAGCGGATAGTAACACAATTGTTGACTTGT 1216
Query 984 ATGGATGGACCTAGTAACAAA---G--------G-TCCTGAGTCTAGTGCTGGATTTGTT 1031
|||||||||||| |||||||| | | |||||| ||||||||||| ||||||
Sbjct 1217 ATGGATGGACCTGGTAACAAAGGCGATAAAAATGCTCCTGATTCTAGTGCTGGTTTTGTT 1276
Query 1032 CTCGTCATTGGAGCTACAAATAGGCCTGATGCTCTGGATCCTGCTTTGAGAAGAAGTGGA 1091
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1277 CTTGTCATTGGAGCTACAAATAGGCCTGATGCTCTTGATCCTGCTTTGAGGAGAAGTGGA 1336
Query 1092 CGATTTGAGTGTGAGATCGCTCTGAGTGTTCCAGATGAAGATGCAAGGGCTGAGATCCTC 1151
|||||||| |||||||||||| | || |||||||||||| |||||||||||||| |||
Sbjct 1337 CGATTTGAAACTGAGATCGCTCTAACTGCTCCAGATGAAGACGCAAGGGCTGAGATACTC 1396
Query 1152 TCTGTTGTAGCCCAAAAACTTAGACTAGAAGGGCCCTTTGACAAGAAAAGAATAGCTCGT 1211
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1397 TCTGTTGTAGCCCAAAAACTTAGATTAGAAGGACCCTTTGACAAGAAAAGAATAGCTCGT 1456
Query 1212 TTAACACCGGGGTTTGTTGGAGCCGATTTGGAGGGTGTTGCTAACATGGCTGGCAGGATA 1271
||||||||||| ||||||||||| ||||||||| |||||||| || |||||||||||| |
Sbjct 1457 TTAACACCGGGTTTTGTTGGAGCTGATTTGGAGAGTGTTGCTTACTTGGCTGGCAGGAAA 1516
Query 1272 GCCACAAAGAGGATCTTGGATTTAAGAAAATCTCAACTGTCTGAGAACGGTGAAGATGAT 1331
|||| ||||| |||||||||| ||| |||||| ||| ||||| | |||||||||| |||
Sbjct 1517 GCCATTAAGAGAATCTTGGATTCAAGGAAATCTGAACAGTCTGGGGACGGTGAAGACGAT 1576
Query 1332 GATAATTCTTGGCTGAGGCAT-CCCTGGCCAGAAGAAGAGTTGGAAAAACTCTTTGTCAA 1390
| || |||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1577 -A-AA-TCTTGGCTGAGG-ATGCCCTGGCCAGAAGAAGAGTTGGAAAAGCTCTTTGTCAA 1632
Query 1391 GATGTCTGATTTTGAGGAAGCAGTGAATCTAGTTCAAGCATCTTTGACAAGAGAAGGATT 1450
||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1633 AATGTCTGATTTCGAGGAAGCAGTGAATCTAGTTCAGGCATCTTTAACAAGAGAAGGATT 1692
Query 1451 CTCTATCGTGCCTGATGTCAAGTGGGATGATGTTGGTGGACTTGAGCATCTACGACTTGA 1510
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1693 CTCTATCGTGCCTGATGTCAAGTGGGATGATGTTGGTGGACTTGACCATCTACGACTTCA 1752
Query 1511 ATTCAACCGTTATATAGTCAGACCTATCAAAAAGCCTGATATTTATAAGGCTTTTGGGGT 1570
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1753 ATTCAACCGTTATATAGTGAGGCCTATCAAAAAGCCTGATATTTATAAGGCTTTTGGGGT 1812
Query 1571 AGACTTAGAGACAGGATTTTTACTCTATGGACCACCTGGTTGTGGCAAGACATTGATTGC 1630
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1813 AGACTTAGAGACAGGGTTTTTGCTCTATGGACCACCGGGTTGTGGCAAGACATTGATTGC 1872
Query 1631 AAAGGCGGTTGCCAACGAGGCAGGAGCTAATTTCATGCACATAAAGGGTGCAGAACTTCT 1690
|||||| | ||| |||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1873 AAAGGCAGCTGCTAACGAGGCTGGAGCTAATTTCATGCACATCAAGGGTGCCGAACTTCT 1932
Query 1691 AAACAAATACGTTGGAGAGAGCGAGCTTGCTATTCGGACATTGTTTCAGCGGGCCCGGAC 1750
||| |||||||||||||| || |||||||||||||| || ||||||||||| || |||||
Sbjct 1933 AAATAAATACGTTGGAGAAAGTGAGCTTGCTATTCGTACGTTGTTTCAGCGAGCTCGGAC 1992
Query 1751 ATGCT-CGCCATGTGTAATCTTCTTTGACGAGGTGGATGCTTTGACAACAAGCCGTGGCA 1809
||| | | |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1993 ATG-TGCACCATGTGTAATCTTCTTTGATGAGGTGGATGCTTTGACAACAAGTCGTGGCA 2051
Query 1810 AAGAAGGTGCCTGGGTTGTTGAGCGGCTTTTAAACCAGTTTCTTGTTGAGCTGGATGGTG 1869
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2052 AAGAAGGTGCTTGGGTTGTTGAACGGCTTTTGAACCAGTTTCTTGTTGAGCTGGATGGTG 2111
Query 1870 GAGAGAGGCGTAATGTATATGTAATTGGAGCTACAAACAGGCCAGATGTAATTGATCCTG 1929
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2112 GAGAGAGGCGTAATGTATATGTAATTGGAGCTACAAACAGGCCAGATGTAGTTGATCCTG 2171
Query 1930 CGTTCTTGAGACCCGGTAGGTTTGGGAATCTTCTATACGTACCCCTCCCTAACGCGGATG 1989
| ||||||||||| ||||| |||||||||||||| || ||||||||||| ||||| ||||
Sbjct 2172 CTTTCTTGAGACCGGGTAGATTTGGGAATCTTCTTTATGTACCCCTCCCCAACGCAGATG 2231
Query 1990 AACGTGCTTCAATTTTAAAAGCTATCGCAAGGAAGAAGCCCATAGATCCTAGTGTTGATC 2049
| |||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 2232 AGCGTGCTTCAATTCTAAAAGCTATTGCAAGGAAGAAACCGATAGATCCTAGTGTTGATC 2291
Query 2050 TGGATGGCATTGCAAAGA-TGAAATGTGAAGGTTTCAGCGGAGCTGATCTTGCTCACTTG 2108
||||||| |||||||||| | || |||||||||||||||||||||||||| || ||||||
Sbjct 2292 TGGATGGAATTGCAAAGAAT-AACTGTGAAGGTTTCAGCGGAGCTGATCTCGCACACTTG 2350
Query 2109 GTGCAAAAAGCTACATTCCAGGCAGTGGAGGAGATAACAAGTTCCGGTGAAGAT-GA-TG 2166
|||||||||||||||||||| |||||||||||||| | | | ||| |||| | | | ||
Sbjct 2351 GTGCAAAAAGCTACATTCCAAGCAGTGGAGGAGATGATAGGCTCCAGTGA-G-TCGTCTG 2408
Query 2167 ATGATGATATTACAGATACAA-GTCAGTGTACGATTAAGATGACTCATTTCGAGCAAGCC 2225
| |||||| ||||||||| || | |||||||| || |||| || |||||||||||||||
Sbjct 2409 AAGATGATGTTACAGATATAACG-CAGTGTACAATCAAGACGAGGCATTTCGAGCAAGCC 2467
Query 2226 TTGTCCTTAGTCTCACCTTCTGTGAACAAACAGCAAAGAAGACACTACCAGGAACTATCG 2285
||||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||
Sbjct 2468 TTGTCCTTAGTCTCACCATCTGTGAACAAACAGCAAAGAAGACACTATGACGCACTATCA 2527
Query 2286 GTAA-GACTCCAAGAAAGCAGT-GGAAGGAA 2314
|| | || ||||||||| || || |||||
Sbjct 2528 ACAAAG-CTTCAAGAAAGC-GTTGGGAGGAA 2556
> AT1G16550.1 | Symbols: | pseudogene, putative cell division
cycle protein, blastp match of 53% identity and 2.4e-136 P-value
to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695)
corresponds to a region of the predicted gene.~similar to
valosin-containing protein (U20213) {Oryza sativa (japonica
cultivar-group)} | chr1:5665907-5668209 FORWARD LENGTH=2303
Length=2303
Score = 1690 bits (915), Expect = 0.0
Identities = 1063/1132 (94%), Gaps = 20/1132 (2%)
Strand=Plus/Plus
Query 281 AAGGAAGAAAGTGTCTTCTTCTCCGTCTTATTCTTCGACTTCTGAGGACGAGGACGCTGT 340
|||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 1 AAGGAAGAAAGTGTCTTCGTCGCCGTCTCATTCTTCGACTTCTGAGGACGAGGACGCTGT 60
Query 341 TTACAGCGAGAAGCTGAGTCCAAGGTTTGATTTGATCAATGACAGTCTACGAGATAACTA 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTACAGCGAGAAGCTGAGTCCAAGGTTTGATTTGATCAATGACAGTCTACGAGATAACTA 120
Query 401 TGCCAAGCTAAACAGTTCCTTGAAGAAACCAATTGGGT---CGCCTGTGGAGAAGAATGT 457
||||||||| || | | |||||||||||||||| |||||||||||||||||||
Sbjct 121 TGCCAAGCT-AA-A----C---AAGAAACCAATTGGGTCGCCGCCTGTGGAGAAGAATGT 171
Query 458 GGAAGTTGAGACTGTGGGAAACAAAGGTAGAAGTAAGATGGCTACAATGGGGTCGAGAAA 517
|||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 172 TGAAGTTGAAACTGTGGGTAACAAAGGTAGAAGTAAGATGGCTACAATGGGGTTGAGAAA 231
Query 518 GGAGTCTAAAGGCTCTCTTTCCGTCAGTGGAACTACTGGTAATGGTGAATTGGAAGTGA- 576
||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||| || |
Sbjct 232 GGAGTCTAAAGACTCACTTTCCATCAGTGGAACTACTGGTAATGGTGATTTGGATGT-AG 290
Query 577 AGGGTGATAAAGGACCTACTTTTAAAGATTTTGGTGGGATTAGGAAAGTGTTGGATGAAT 636
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 291 TGGGTGATAAAGGACCTACTTTTAAAGATTTTGGTGGGATTAAGAAAGTGTTGGATGAAC 350
Query 637 TGGAGAGGAATGTTTTGTTCCCGATTCTCAATCCTGAACCGTTTAAGAAGATCGGAGTTA 696
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 351 TGGAGAGGAATGTTTTGTTCCCGATTCTCAATCCTGAACCGTTTAAGAAGATTGGAGTTA 410
Query 697 AGCCACCAAGCGGGATTCTATTCCATGGACCACCTGGCTGTGGAAAGACCAAGTTGGCTA 756
||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 411 AGCCACCGAGTGGGATTCTATTTCATGGACCACCTGGCTGTGGGAAGACCAAGTTGGCTA 470
Query 757 ATGCTATAGCCAATGAAGTTGGTGTTCCGTTTTATAAGATTTCAGCTACAGATGTGGTTT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ATGCTATAGCCAATGAAGTTGGTGTTCCGTTTTATAAGATTTCAGCTACAGATGTGGTTT 530
Query 817 CTGGTGTCTCTGGTGCTTCTGAAGAGAATATTAGAGAGCTTTTCTCTAAAGCGTATAGGA 876
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 531 CTGGTGTCTCTGGTGCTTCTGAAGAGAATCTTAGAGAGCTTTTCTCTAAAGCGTATAGGA 590
Query 877 CTGCGCCTTCCATTGTGTTTATCGATGAGATTGATGCGATTGGATCAAAGAGGGAAAATC 936
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CTGCACCTTCCATTGTGTTTATCGATGAGATTGATGCGATTGGATCAAAGAGGGAAAATC 650
Query 937 AGCAAAGGGAGATGGAGAAGCGGATTGTAACGCAATTATTGACTTGTATGGATGGACCTA 996
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGCAAAGGGAGATGGAAAAGCGGATTGTAACGCAATTATTGACTTGTATGGATGGACCTG 710
Query 997 GTAACAAAGGTCCTGAGTCTAGTGCTGGATTTGTTCTCGTCATTGGAGCTACAAATAGGC 1056
||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |||
Sbjct 711 GTAACAATGGTCCTGAGTCTAGTGTTGGATTTGTTCTCGTTATTGGAGCTACAAAT-GGC 769
Query 1057 CTGATGCTCTGGATCCTGCTTTGAGAAGAAGTGGACGATTTGAGTGTGAGATCGCTCTGA 1116
|||||| ||| |||||||||||||| ||||||||||||||||| |||||||| ||||| |
Sbjct 770 CTGATGTTCTTGATCCTGCTTTGAGGAGAAGTGGACGATTTGAATGTGAGATTGCTCT-A 828
Query 1117 G-TGTTCCAGATGAAGATGCAAGGGCTGAGATCCTCTCTGTTGTAGCCCAAAAACTTAGA 1175
| ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 829 GGTGTTCCAGATGAAGATGCAAGAGCTGAGATACTTTCTGTTGTAGCCCAAAAACTTAGA 888
Query 1176 CTAGAAGGGCCCTTTGACAAGAAAAGAATAGCTCGTTTAACACCGGGGTTTGTTGGAGCC 1235
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 889 CTAGAAGGGCCCTTTGACAAGAAAAGAATAGCTCGTTTAACGCCGGGTTTTGTTGGAGCA 948
Query 1236 GATTTGGAGGGTGTTGCTAACATGGCTGGCAGGATAGCCACAAAGAGGATCTTGGATTTA 1295
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct 949 GATTTGGAGGGTGTTGCTAACATGGCTGGCAGGATTGCCACAAAGAGAATCTTGGATTCA 1008
Query 1296 AGAAAATCTCAACTGTCTGAGAACGGTGAAGATGATGATAATTCTTGGCTGAGGCATCCC 1355
||||||||||||||| ||| | || |||||||||| | |||||||||||||||||||
Sbjct 1009 AGAAAATCTCAACTGGCTGGGGACTCTGAAGATGAT-AG--TTCTTGGCTGAGGCATCCC 1065
Query 1356 TGGCCAGAAGAAGAGTTGGAAAAACTCTTTGTCAAGATGTCTGATTTTGAGG 1407
|||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1066 TGGCCAGAAGAAGAGTTGGAAAAACTCTTTGTTAAGATGTCTGATTTCGAGG 1117
Score = 1158 bits (627), Expect = 0.0
Identities = 723/769 (94%), Gaps = 8/769 (1%)
Strand=Plus/Plus
Query 1558 AGGCTTTTGGGGTAGACTTAGAGACAGGATTTTTACTCTATGGACCACCTGGTTGTGGCA 1617
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1464 AGGCTTTTGGGGTAGACTTAGAGGTTGGATTTTTACTCTATGGACCACCGGGTTGTGGCA 1523
Query 1618 AGACATTGATTGCAAAGGCGGTTGCCAACGAGGCAGGAGCTAATTTCATGCACATAAAGG 1677
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1524 AGACATTGATTGCAAAGGCAGTTGCTAACGAGGCAGGAGCTAATTTCATGCACATCAAGG 1583
Query 1678 GTGCAGAACTTCTAAACAAATACGTTGGAGAGAGCGAGCTTGCTATTCGGACATTGTTTC 1737
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 GTGCAGAGCTTCTAAACAAGTACGTTGGAGAGAGCGAGCTTGCTATTCGGACATTGTTTC 1643
Query 1738 AGCGGGCCCGGACATGCTCGCCATGTGTAATCTTCTTTGACGAGGTGGATGCTTTGACAA 1797
|||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1644 AGCGTGCCCGGACATGTTCGCCATGTGTGATCTTCTTTGATGAGGTGGATGCTTTGACAA 1703
Query 1798 CAAGCCGTGGCAAAGAAGGTGCCTGGGTTGTTGAGCGGCTTTTAAACCAGTTTCTTGTTG 1857
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1704 CAAGCCGTGGCAAAGAAGGTGCCTGGGTTGTTGAACGGCTTTTAAACCAGTTCCTTGTTG 1763
Query 1858 AGCTGGATGGTGGAGAGAGGCGTAATGTATATGTAATTGGAGCTACAAACAGGCCAGATG 1917
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1764 AGCTAGACGGTGGAGAGAGGCGTAATGTATACGTAATTGGAGCTACAAACAGGCCAGATG 1823
Query 1918 TAATTGATCCTGCGTTCTTGAGACCCGGTAGGTTTGGGAATCTTCTATACGTACCCCTCC 1977
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1824 TAATTGATCCTGCGTTCTTGAGACCTGGTAGGTTTGGGAATCTTCTATATGTACCCCTCC 1883
Query 1978 CTAACGCGGATGAACGTGCTTCAATTTTAAAAGCTATCGCAAGGAAGAAGCCCATAGATC 2037
||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1884 CTAACGCCGATGAACGTGCTTCAATTCTAAAAGCTATTGCAAGGAAGAAGCCCATAGATC 1943
Query 2038 CTAGTGTTGATCTGGATGGCATTGCAAAGATGAAATGTGAAGGTTTCAGCGGAGCTGATC 2097
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1944 CTAGTGTTGATCTTGATAGCATTGCAAAGATGAATTGTGAAGGTTTCAGCGGAGCTGATC 2003
Query 2098 TTGCTCACTTGGTGCAAAAAGCTACATTCCAGGCAGTGGAGGAGAT-A--ACAAGTTCCG 2154
| |||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 2004 TCGCTCACTTGGTGCAAAAAGCTACATTCCAGGCAGTGGAGGAGATCACCACAATTTCAT 2063
Query 2155 GTGAAGATGATGATGATGATATTACAGATACAAGTCAGTGTACGATTAAGATGACTCATT 2214
||||||||||||| ||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 2064 GTGAAGATGATGACGAT-AT-T-ACAGATACAAGTCAGTGTACGATTAAGATGACTCATT 2120
Query 2215 TCGAGCAAGCCTTGTCCTTAGTCTCACCTTCTGTGAACAAACAGCAAAGAAGACACTACC 2274
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2121 TCGAGCAAGCATTGTCCTTAGTCTCACCTTCTGTGAACAAACAGCAAAGAAGACACTATG 2180
Query 2275 AGGAACTATCGGTAA-GACTCCAAGAAAGCAGTGGAAGGAAACCATAGG 2322
|||||||||| || | ||||||||||||| |||||||||||||||||
Sbjct 2181 AGGAACTATCAAAAAAG-CTCCAAGAAAGCATTGGAAGGAAACCATAGG 2228
Score = 261 bits (141), Expect = 2e-68
Identities = 151/156 (97%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 1405 AGGAAGCAGTGAATCTAGTTCAAGCATCTTTGACAAGAGAAGGATTCTCTATCGTGCCTG 1464
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 1221 AGGAAGCAGTGAATCTAGTTCAGGCATCTTTAACAAGGGAAGGATTCTCTATCGTGCCTG 1280
Query 1465 ATGTCAAGTGGGATGATGTTGGTGGACTTGAGCATCTACGACTTGAATTCAACCGTTATA 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1281 ATGTCAAGTGGGATGATGTTGGTGGACTTGAGCATCTACGACTTGAATTCAACCGCTATA 1340
Query 1525 TAGTCAGACCTATCAAAAAGCCTGATATTTATAAGG 1560
||||||||||||||||||||||||||||||| ||||
Sbjct 1341 TAGTCAGACCTATCAAAAAGCCTGATATTTACAAGG 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116214261675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5