BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920564
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16590.1 | Symbols: REV7, ATREV7 | DNA-binding HORMA family ... 966 0.0
> AT1G16590.1 | Symbols: REV7, ATREV7 | DNA-binding HORMA family
protein | chr1:5673795-5675131 FORWARD LENGTH=980
Length=980
Score = 966 bits (523), Expect = 0.0
Identities = 640/695 (92%), Gaps = 13/695 (2%)
Strand=Plus/Plus
Query 4 TCTCTGAGACTT-TGAGACGCTAATGGGTCTGAAGGATGATAATCAGTCAGGAGAAGTTG 62
|||| |||| || ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 70 TCTCGGAGA-TTGTGAGACGCTAATGAGTCGGAAGGATGATAATCAGTCAGGAGAAGTTG 128
Query 63 CTGGTACTGTGGTGGAATTTATGGAAGTAGCCATCACAATGATTGTATTCCTCAAAGGTT 122
| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 129 GTCGTACTCTGGTGGACTTTATGGAAGTAGCCATCACAATGATTGTATACCTCAAAGGTT 188
Query 123 TTTACCCATCTGCGGCATTTGAAAGGCGGAGATATATGAATGTGGTGGTGCAAAGAGCTA 182
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 189 TTTACCCATCTGCGGCATTTGAAAGGAGGAGATATATGAATGTGGTGGTGCAAAGAGCAA 248
Query 183 GACATCCTGAGCTACGTGACTATATTCACTCTGCTGCATATGGGCTTCTTCCTTTTATTC 242
| |||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||
Sbjct 249 GGCATCCTGAGCTACGCGACTATATTCACTCTGCTGCTTCTGGACTTCTTCCTTTTATTG 308
Query 243 AAAAGGGTCTTGTTGAGAGAGTAGCAGTCAT-TTTTTCCAGCAAGGATAATGTTCCTGTA 301
||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||
Sbjct 309 AAAAGGGTCTTGTTGAGAGAGTAGCAGTCGTGTTTTT-CAGCGAGGATAATGTTCCTGTA 367
Query 302 GAGAGGTTCATCTTCAAGCTCACGATTAACCCGTCTTCCGCTGCTTTTGTAGAAGAGGGT 361
|||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 368 GAGAGGTTCATCTTCAAGATCACGATTAAACCGTCTTGCGCTGCTTTAGTAGAAGAGGGT 427
Query 362 CAACTCCAGTTTGCGCTTAGGTCCTTCTTAATCAAGCTTTCCGTCTCAAAATCCCTTGTC 421
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 428 CAACTGGAGTTTGCGCTTAGGTCCTTCTTAATCAAGCTTTCCGTCTCAAAATCCCTAGTC 487
Query 422 AAACCTCTTCCCCAAAATTGTAGATGGGAGGTAACGGCTTATTTGAGGTCACTTCCTCAA 481
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 488 AAACCTCTTCCCCTAAATTGTAGATGGGAGGTAACGGCTTATCTGAGGTCACTTCCTCAA 547
Query 482 GTGGGTTCAAGCAAAG--G-AGAGCTGTGGATTCCAACTGACACAAAGCAGTGGCAGAAC 538
|||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 548 GTGGGTTCAAGCAAAGAAGCAGAGCTGTGGATTCCAACAGACACAAAGCAGTGGCAGAAC 607
Query 539 CCACCAGTTATAACTCCCGTCAAGTCTTTGAACAGCGAGCCACTCTGCTTGCAGCTTTAC 598
||||||||| |||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 608 CCACCAGTTTTAACGCCAGTCAAGTCTTTGAACAGCGAACCACTCTGCTTGCAGCTTTAC 667
Query 599 TTGGAACACCCAAGTTTGTCTCAACCACACAACCTTGTCAAGCCC-A--ATG-C--AGCC 652
||||||||||||||||||||| |||||| |||||||||||| ||| | ||| | | ||
Sbjct 668 TTGGAACACCCAAGTTTGTCTGAACCACTCAACCTTGTCAACCCCGAGGATGTCGCACCC 727
Query 653 CATGAGCCATAAGTAAGATAACACATGAGCTTCGG 687
||||| |||||||| |||| ||| ||||| ||||
Sbjct 728 CATGACCCATAAGTCAGATTACATGTGAGCCTCGG 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5