BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920571
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16650.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2512 0.0
> AT1G16650.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:5687943-5691198
FORWARD LENGTH=1714
Length=1714
Score = 2512 bits (1360), Expect = 0.0
Identities = 1527/1608 (95%), Gaps = 9/1608 (1%)
Strand=Plus/Plus
Query 1 GTTGCTGCTACTCAAGTCATCGGGAAAATGAAGAGCAATAAGTATTCTTGCAACACAAGA 60
|||||||||||||| |||||||||| ||||||||||||||||| ||||||||| || |||
Sbjct 25 GTTGCTGCTACTCAGGTCATCGGGATAATGAAGAGCAATAAGTTTTCTTGCAAAACGAGA 84
Query 61 GCCGAAACCCTAGAATGGATCATC-GCCATTATCGATTTCCTTAAACCTTTTTCTTTCCT 119
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 85 GCCGAAACCCTAGAATGGATCA-CAGCCATTATCGATTTCCTTAAACCGTTTTCTTTCCT 143
Query 120 AATCAATGCTCATGTTGTCAATTTCTTCAAGGATAAGCAATGGGAAGCTGTTGATGAGGT 179
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 144 AATCAATGCTCACGTTGTCAATTTCTTCAAGGATAAGCAATGGGAAGCTGTTAATGAGGA 203
Query 180 ATGGATGAGTTGCTTAAAGGATGAGAAGCCGGAAAATATTCTTCTTATTCCCTCCGG-GG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 204 ATGGATGAGTTGCTTAAAGGATGAGAAGCCGGAAAATATTCTTCTTATTCCCTCCGGTGG 263
Query 239 TTGTCCAGGATGACTGGCCTGCTTCACTCAAGGAATTTGTTCACACGTTGAGGTCTCTAT 298
|||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 264 -TGTCCAGGATCACTGGCCTGCTTCACTAAAGAAATTTGTTCACACGTTGAGGTCTCTAT 322
Query 299 CGTTTCCTAGAGAGCAAGCGGATTTACATGCGATACTCGCAGATGTGGATTTGGTACCGC 358
|||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||||| |
Sbjct 323 CGTTTCCTCGAGAGCAAGCGGATTTACAGGCGATACTCGCAGACGTGGATATGGTACCTC 382
Query 359 TTAGCACCGTTCTTTCACAGGGTATGAATCTTAAGAAAAAACATGAGGTTGAAGTTCTTT 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 383 TTAGCACCGTTCTTTCACAGGGCATGAATCTTAAGAAAAAACATGAGGTTGAAGTTCTTT 442
Query 419 CCTCTGTTGTTAGCTCAGTTGTTAAGAGTGTTGGAGCTCCTACTGTCGTTGATGTCGGTG 478
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 443 CCTCTGTTGTTAGCTCAGTTGTTAAGAGTGTTGGAGCTCCTACTGTTGTTGATGTCGGTG 502
Query 479 CTGGACAGGGTTATCTAGCGCAGGTTCTTTCTTTCCAATATAAGCACTCAGTGGTTGCAA 538
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 503 CTGGCCAGGGTTATCTAGCGCAGGTTCTCTCTTTCCAATATAAGCACTCAGTGGTTGCAA 562
Query 539 TTGATTCTTCCTCTCATCATGGAACGGTAACAGATTCACGTGCAGCACGTATCAGAAAGC 598
| |||||||||||||||||||||| |||||||||| |||| |||||||| || | |||||
Sbjct 563 TCGATTCTTCCTCTCATCATGGAAAGGTAACAGATGCACGCGCAGCACGCATAAAAAAGC 622
Query 599 ATTTTGCAGCACAGATGCGTAAATCTGGTTCAGGAAACAAGTGCCCAGATGTTCCAATGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ATTTTGCAGCACAGATGCGTAAATCTGGTTCAGGAAACAAGTGCCCAGATGTTCCAATGA 682
Query 659 CGATTACATGCCGTGTATTATCCTCAGAGATGTTGAAAGCCTTGACCAATGTTCCTCTGG 718
|||||||||||||||| |||||| |||| |||||||| |||||||| |||||| |||||
Sbjct 683 CGATTACATGCCGTGTTTTATCCACAGAAATGTTGAAGGCCTTGACTGATGTTCATCTGG 742
Query 719 AGAAA-AGTGACACGGATTTTAATGGAAGTGCATTGAATGAAG--G-TCAAAGCAGATCA 774
|||| | ||| ||||||| || |||||||||||||||||||| | |||||||||||||
Sbjct 743 AGAAGGA-TGAGACGGATTCTAGTGGAAGTGCATTGAATGAAGAAGGTCAAAGCAGATCA 801
Query 775 CAATCAGCAAGTGATGCAAACAGATTGTGTTCACTTGTTCTTGCTGGCCTTCATGCATGT 834
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 802 CAATCATCAAGTGATGCAAACAGATCGTGTTCACTTGTTCTTGCTGGCCTTCATGCATGT 861
Query 835 GGGGATCTATCTGTTACAATGCTAAGGACTTTTATGGAGTGCGAAGAAGTTAAAGCAGTA 894
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 862 GGAGATCTATCAGTTACAATGCTAAGGACTTTTATGGAGTGTGAAGAAGTTAAAGCATTA 921
Query 895 GTGAGCGTTGGCTGCTGTTACAACTTATTGTCTGAAAAAAGTAGTGACGATTCTTGTTCC 954
|||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 922 GTGAGCATTGGCTGTTGTTACAACTTATTATCTGAAAAAAGTAGTGAGGATTCTTGTTCC 981
Query 955 AAATGTGGCTATCCGATGAGCGCTGGTCTCAAATCCTTGGGCTTTTCCCTTGGCAAAAAT 1014
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 982 AAATGTGGCTATCCGATGAGCGCTGGTCTCAGATCCTTGGGCTTTTCCCTTGGCAAAAAT 1041
Query 1015 GCCCGTGATTTAGCTTGTCAGAGTGCTGAGAGATGGAGCAGCTTAGGAGAAGATGCTGGT 1074
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1042 GCCCGTGATTTAGCTTGTCAGAGTGCTGAGAGATGGAGCAGTTTAGGAGAAGATGCTGGT 1101
Query 1075 CTGCAGAATTTCCAGTTGCATTCTTTTCGTGCTGCTTTCCAAATGGTTCTGTCAAAACAC 1134
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 CTGCAGAATTTCGAGTTGCATTCTTTTCGTGCTGCTTTCCAAATGGTTCTGTCAAAACAT 1161
Query 1135 TATCCAGAGGTTTTGGTGACAAGTCCATCCATTGGGCGCCAAGGGAAGGCATTCCGTCGT 1194
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1162 TATCCAGAGGTTTTGGCGACAAGTCCATCCATTGGGCGCCAAGGTAAGGCATTCCGTCGT 1221
Query 1195 CAACAGCAACGAAAATCCCTTGAAACTCCAGCAGCAGTAGATACAACTAGGAAAGACACT 1254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 CAACAGCAACGAAAATCCCTTGAAACTCCAGCAGCAGTAGATACAACTAGGAAAGACACG 1281
Query 1255 GATGACAAGAAACCCATGAGGCAGACAAGCTCGAATTCCGACATGTGTTCTTCTTTCGAG 1314
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1282 GTTGACAAGAAACCCATGAGGCAGACAAGCTTGAATTCCGACATGTGTTCTTCTTTTGAG 1341
Query 1315 AAATTTTGCCTGTCAGCATTTTCCCGCTTGAATCTAGAACATCCTCTAGATCTCGACCTG 1374
|| || ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1342 AAGTTCTGCTTGTCAGCATTTTCCCGCTTGAATCTAGAACACCCTCGAGATCTCGACCTG 1401
Query 1375 AATACCACATGGAAGGAAGCTGATGCATTCACTGAACTGATAGGGCCTTACTGGTCTATT 1434
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 AATGCCACATGGAATGAAGCTGATGCATTCACTGAACTGATAGGGCCTTACTGGTCTATT 1461
Query 1435 CGAGCTGCATTAGGACCGGTGCTTGAGACATTGATCTTGCTTGATAGACTTATGTTTCTC 1494
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1462 CGAGCCGCATTAGGACCAGTGCTTGAGACATTGATCTTGCTTGATAGACTTATGTTCCTC 1521
Query 1495 CAAGAACAAGGAGACTCCATAAAAGTGGTTATGCTTCCCATCTTTGATCCCACCATCTCA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 CAAGAACAAGGAGACTCCATAAAAGTGGTTATGCTTCCCATCTTTGATCCCACCATCTCA 1581
Query 1555 CCTAGGAATGTCGCCATTATTGCTAAAAGACATTGACCCTAAAGCTTA 1602
||||||||||| ||||||||||||| ||||| ||||||||||||||||
Sbjct 1582 CCTAGGAATGTGGCCATTATTGCTAGAAGACTTTGACCCTAAAGCTTA 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79668264915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5