BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920584
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16780.1 | Symbols: VHP2;2, AtVHP2;2 | Inorganic H pyrophosp... 1153 0.0
AT1G78920.1 | Symbols: AVP2, AVPL1, AtVHP2;1, VHP2;1, VP2 | vac... 826 0.0
> AT1G16780.1 | Symbols: VHP2;2, AtVHP2;2 | Inorganic H pyrophosphatase
family protein | chr1:5739299-5744214 REVERSE LENGTH=2839
Length=2839
Score = 1153 bits (624), Expect = 0.0
Identities = 660/678 (97%), Gaps = 0/678 (0%)
Strand=Plus/Plus
Query 72 GGAACTCGCAATGCTAGTGTGAAATCTCCAGTAGAGGATCCAATGGTTGTGCTTCAGAAA 131
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1375 GGAACTCGCAATGCTAGTGTGAAATCTCCAGTAGAGGATCCAATGGTTGTTCTTCAGAAA 1434
Query 132 GGATATTCGCTGACTATTATATTAGCCGTTTTGACATTTGGCGCGTCGACTCGCTGGCTG 191
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1435 GGATATTCGCTGACTATTATATTAGCTGTTTTGACATTTGGCGCGTCGACTCGCTGGCTG 1494
Query 192 CTTTACACAGAACAAGCTCCATCTGCTTGGGTGAATTTTTTCATGTGTGGCTTGGTTGGC 251
|| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 1495 CTATACACAGAACAAGCTCCATCTGCTTGGTTGAATTTCTTCATGTGTGGCTTAGTTGGC 1554
Query 252 ATTATCACAGCCTATGTCTTTGTCTGGATATCCAGATATTCTACTGACTATAAGTATGAG 311
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1555 ATTATCACAGCCTATGTCTTTGTCTGGATATCCAGATATTATACTGACTATAAGTATGAG 1614
Query 312 CCTGTTCGGACGTTGGCTCTTGCTAGCTCCACTGGTCATGGAACCAATATAATTGCTGGG 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 CCTGTTCGGACGTTGGCTCTTGCTAGCTCCACTGGTCATGGAACCAATATAATTGCTGGG 1674
Query 372 GTCAGCTTGGGTCTGGAGTCCACGGCTCTTCCTGTTTTAGTTACAAGTGTAGCTATCATT 431
||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1675 GTCAGCTTGGGTCTGGAATCCACGGCTCTTCCTGTTTTGGTTATAAGTGTAGCTATCATT 1734
Query 432 TCTGCTTTTTGGCTGGGCAATACCTCGGGACTAATGGATGAAAAGGGAAACCCCATTGCA 491
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 1735 TCTGCTTTTTGGCTGGGCAATACCTCGGGACTAATAGATGAAAAGGGAAACCCCACTGGA 1794
Query 492 GGTCTATTTGGAACAGCTGTAGCTACAATGGGAATGCTGAGCACTGCAGCTTATGTTCTT 551
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1795 GGTCTATTTGGAACAGCTGTAGCTACAATGGGAATGTTGAGCACTGCAGCTTATGTTCTT 1854
Query 552 ACAATGGACATGTTTGGTCCTATAGCTGATAATGCAGGTGGGATTGTTGAGATGAGCCAG 611
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1855 ACAATGGACATGTTTGGTCCCATAGCTGATAATGCAGGTGGGATTGTTGAGATGAGCCAG 1914
Query 612 CAGCCAGAAAGTGTCCGTGAGATCACTGATGTTCTTGATGCTGTTGGGAATACCACAAAA 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 CAGCCAGAAAGTGTCCGTGAGATCACTGATGTTCTTGATGCTGTTGGGAATACCACAAAA 1974
Query 672 GCAACAACAAAAGGGTTTGCTATTGGATCTGCAGCCCTTGCATCATTCCTTCTTTTTAGT 731
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1975 GCAACAACAAAAGGGTTTGCTATTGGATCTGCTGCCCTTGCATCATTCCTTCTTTTTAGT 2034
Query 732 GCCTATATGGATGAGGTT 749
|| |||||||| ||||||
Sbjct 2035 GCGTATATGGACGAGGTT 2052
Score = 1029 bits (557), Expect = 0.0
Identities = 594/612 (97%), Gaps = 2/612 (0%)
Strand=Plus/Plus
Query 744 GAGGTTGATATTGCGATCCCAGAAGTCTTCATCGGTGGGTTATTAGGTGCCATGCTTATA 803
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2080 GAGGTTGATATTGCGATCCCAGAAGTCTTCATTGGAGGGTTATTAGGTGCCATGCTTATA 2139
Query 804 TTCCTGTTTAGCGCTTGGGCTTGTGCAGCAGTTGGTCGAACTGCACAGGAGGTTGTCAAT 863
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2140 TTCCTGTTTAGCGCTTGGGCTTGTGCAGCAGTTGGTCGAACTGCACAGGAGGTTGTCAAC 2199
Query 864 GAAGTAAGAAGACAGTTCATTGAGAGGCCTGGCATAATGGACTACAAGGAGAAGCCAGAT 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2200 GAAGTAAGAAGACAGTTCATTGAGAGGCCTGGCATAATGGACTACAAGGAGAAGCCAGAT 2259
Query 924 TATGGTCGATGTGTTGCCATTGTCGCATCTTCAGCTTTGAGGGAAATGATAAAACCAGGA 983
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2260 TATGGTCGATGTGTCGCCATTGTCGCATCTTCAGCTTTGAGGGAAATGATAAAACCAGGA 2319
Query 984 GCTTTGGCTATAATATCACCCACTGCAGTTGGTTTTGTGTTCCGGATCTTGGGATACTAC 1043
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2320 GCTTTGGCTATAATATCACCCATTGCAGTTGGTTTTGTGTTCCGGATCTTGGGATACTAC 2379
Query 1044 ACAGGACAACCTCTGCTAGGAGCTAAAGTAGTAGCTGCAATGCTAATGTTTGCAACGGTG 1103
|| ||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 2380 ACTGGACAACCTTTGCTTGGAGCTAAAGTAGTAGCTGCAATGCTAATGTTTGCGACAGTA 2439
Query 1104 TGTGGTATCTTAATGGCTCTTTTCTTAAATACAGCAGGAGGTGCTTGGGACAATGCAAAG 1163
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2440 TGTGGTATCTTAATGGCTCTATTCTTAAATACAGCAGGAGGTGCTTGGGACAATGCAAAG 2499
Query 1164 AAATACATTGAGACAGGAGCTCTAGGAGGCAAAGGAAGTGATTCTCATAAAGCTGCAGTA 1223
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2500 AAATACATTGAGACTGGAGCTCTAGGAGGCAAAGGAAGTGATTCCCACAAAGCTGCAGTA 2559
Query 1224 ACTGGTGATACTGTGGGAGACCCTTTCAAGGACACAGCAGGACCGTCGATTCACGTTCTC 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2560 ACTGGTGATACTGTGGGAGACCCTTTCAAGGACACAGCAGGACCGTCGATTCACGTTCTC 2619
Query 1284 ATCAAAATGTTGGCGACTATCACGCTTGTCATGGCTCCAATCTTTCTCTGATAAAAAAGA 1343
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 2620 ATCAAAATGTTGGCGACTATCACGCTTGTCATGGCTCCTATCTTTCTCTGA-AAAAA-GA 2677
Query 1344 CATCTAATCCTT 1355
||||||||||||
Sbjct 2678 CATCTAATCCTT 2689
> AT1G78920.1 | Symbols: AVP2, AVPL1, AtVHP2;1, VHP2;1, VP2 | vacuolar
H+-pyrophosphatase 2 | chr1:29671493-29676992 FORWARD
LENGTH=3093
Length=3093
Score = 826 bits (447), Expect = 0.0
Identities = 602/679 (89%), Gaps = 2/679 (0%)
Strand=Plus/Plus
Query 72 GGAACTCGCAATGCTAGTGTGAAATCTCCAGTAGAGGATCCAATGGTTGTGCTTCAGAAA 131
||||| || ||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 1567 GGAACACGTGATGCTAGTGTGAAATCTCCGGTAGAGGATCCAATGGCTGTACTTCAGAAA 1626
Query 132 GGATATTCGCTGACTATTATATTAGCCGTTTTGACATTTGGCGCGTCGACTCGCTGGCTG 191
|||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1627 GGATATTCTCTGACAATTATATTAGCTGTTATAACATTTGGCGCGTCGACTCGCTGGCTG 1686
Query 192 CTTTACACAGAACAAGCTCCATCTGCTTGGGTGAATTTTTTCATGTGTGGCTTGGTTGGC 251
|||||||| ||||||||||||||||| ||| | ||||| | | ||||| |||||||||
Sbjct 1687 CTTTACACTGAACAAGCTCCATCTGCATGGTTCAATTTCGCCCTATGTGGGTTGGTTGGC 1746
Query 252 ATTATCACAGCCTATGTCTTTGTCTGGATATCCAGATATTCTACTGACTATAAGTATGAG 311
|| |||||||||||| |||||||||||||||||| ||||| ||| ||||||||| | |||
Sbjct 1747 ATCATCACAGCCTATATCTTTGTCTGGATATCCAAATATTATACAGACTATAAGCACGAG 1806
Query 312 CCTGTTCGGACGTTGGCTCTTGCTAGCTCCACTGGTCATGGAACCAATATAATTGCTGGG 371
||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 1807 CCTGTTCGGACGTTGGCTCTTGCTAGCTCGACTGGTCATGGGACTAATATCATTGCTGGA 1866
Query 372 GTCAGCTTGGGTCTGGAGTCCACGGCTCTTCCTGTTTT-AGTTACAAGTGTAGCTATCAT 430
|| |||||||| ||||| || || |||||||| ||||| | | | |||||||||||| ||
Sbjct 1867 GTAAGCTTGGGCCTGGAATCAACTGCTCTTCCAGTTTTGACT-ATAAGTGTAGCTATTAT 1925
Query 431 TTCTGCTTTTTGGCTGGGCAATACCTCGGGACTAATGGATGAAAAGGGAAACCCCATTGC 490
|||||| | |||| |||||||||||||||| ||| |||| ||||| || | |||| ||
Sbjct 1926 TTCTGCGTATTGGTTGGGCAATACCTCGGGTCTAGTGGACGAAAATGGTATTCCCACTGG 1985
Query 491 AGGTCTATTTGGAACAGCTGTAGCTACAATGGGAATGCTGAGCACTGCAGCTTATGTTCT 550
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||
Sbjct 1986 AGGTCTATTTGGAACAGCCGTTGCTACAATGGGAATGCTAAGCACTGCAGCTTATGTCCT 2045
Query 551 TACAATGGACATGTTTGGTCCTATAGCTGATAATGCAGGTGGGATTGTTGAGATGAGCCA 610
||| |||||||||||||| || |||||||| || || ||||||||||| |||||||||||
Sbjct 2046 TACTATGGACATGTTTGGCCCCATAGCTGACAACGCTGGTGGGATTGTCGAGATGAGCCA 2105
Query 611 GCAGCCAGAAAGTGTCCGTGAGATCACTGATGTTCTTGATGCTGTTGGGAATACCACAAA 670
||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 2106 GCAGCCAGAGAGTGTCCGTGAGATCACTGATCTTCTTGATGCTGTTGGGAACACCACAAA 2165
Query 671 AGCAACAACAAAAGGGTTTGCTATTGGATCTGCAGCCCTTGCATCATTCCTTCTTTTTAG 730
||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct 2166 AGCAACAACGAAAGGGTTTGCCATTGGATCTGCTGCACTTGCATCATTCCTTCTCTTTAG 2225
Query 731 TGCCTATATGGATGAGGTT 749
||| |||||||| ||||||
Sbjct 2226 TGCGTATATGGACGAGGTT 2244
Score = 654 bits (354), Expect = 0.0
Identities = 514/593 (87%), Gaps = 4/593 (1%)
Strand=Plus/Plus
Query 744 GAGGTTGATATTGCGATCCCAGAAGTCTTCATCGGTGGGTTATTAGGTGCCATGCTTATA 803
|||||||||||||| ||||||||||| ||| | ||||| ||||| ||||||||||||||
Sbjct 2272 GAGGTTGATATTGCTATCCCAGAAGTGTTCGTTGGTGGATTATTGGGTGCCATGCTTATT 2331
Query 804 TTCCTGTTTAGCGCTTGGGCTTGTGCAGCAGTTGGTCGAACTGCACAGGAGGTTGTCAAT 863
||||| ||||| |||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 2332 TTCCTCTTTAGTGCTTGGGCATGCGCGGCAGTTGGTCGAACTGCACAAGAGGTTGTCAAC 2391
Query 864 GAAGTAAGAAGACAGTTCATTGAGAGGCCTGGCATAATGGACTACAAGGAGAAGCCAGAT 923
||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2392 GAAGTAAGAAGGCAATTTATTGAGAGGCCTGGCATAATGGAGTACAAGGAGAAGCCAGAT 2451
Query 924 TATGGTCGATGTGTTGCCATTGTCGCATCTTCAGCTTTGAGGGAAATGATAAAACCAGGA 983
||| |||| ||||| ||||| ||||||||| ||||||| || ||||||||||| ||||||
Sbjct 2452 TATAGTCGCTGTGTCGCCATAGTCGCATCTGCAGCTTTAAGAGAAATGATAAAGCCAGGA 2511
Query 984 GCTTTGGCTATAATATCACCCACTGCAGTTGGTTTTGTGTTCCGGATCTTGGGATACTAC 1043
||||| ||||| |||||||| || ||||||||| ||||| || |||||||| ||||||
Sbjct 2512 GCTTTAGCTATTGCATCACCCATTGTAGTTGGTTTGGTGTTTCGAATCTTGGGTTACTAC 2571
Query 1044 ACAGGACAACCTCTGCTAGGAGCTAAAGTAGTAGCTGCAATGCTAATGTTTGCAACGGTG 1103
||||||||||||||||| ||||| ||||| |||||| | ||||| ||||||||||| ||
Sbjct 2572 ACAGGACAACCTCTGCTCGGAGCAAAAGTTGTAGCTTCTATGCTCATGTTTGCAACAGTT 2631
Query 1104 TGTGGTATCTTAATGGCTCTTTTCTTAAATACAGCAGGAGGTGCTTGGGACAATGCAAAG 1163
||||||||||||||||| |||||| |||| || || ||||||||||||||||||||||||
Sbjct 2632 TGTGGTATCTTAATGGCACTTTTCCTAAACACGGCGGGAGGTGCTTGGGACAATGCAAAG 2691
Query 1164 AAATACATTGAGACAGGAGCTCTAGGAGGCAAAGGAAGTGATTCTCATAAAGCTGCAGTA 1223
|||||||| ||||| || || || || |||||||||||||| |||| ||||| || ||
Sbjct 2692 AAATACATAGAGACCGGGGCACTTGGGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTG 2751
Query 1224 ACTGGTGATACTGTGGGAGACCCTTTCAAGGACACAGCAGGACCGTCGATTCACGTTCTC 1283
||||||||||| |||||||| || |||||||||||||| || || || |||||||| |||
Sbjct 2752 ACTGGTGATACCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTC 2811
Query 1284 ATCAAAATG-TTGGCGACTATCACGCTTGTCATGGCTCCAATCTTTC-TCTGA 1334
|| |||||| ||| ||||||| || || ||||||||||| | |||| |||||
Sbjct 2812 ATAAAAATGCTTG-CGACTATAACTCTCGTCATGGCTCCGGT-TTTCCTCTGA 2862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66716524305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5