BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920592
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16858.1 | Symbols: CPuORF55 | conserved peptide upstream op... 2460 0.0
AT1G16860.1 | Symbols: | Ubiquitin-specific protease family C1... 2460 0.0
AT1G78882.1 | Symbols: CPuORF56 | conserved peptide upstream op... 1533 0.0
AT1G78880.1 | Symbols: | Ubiquitin-specific protease family C1... 1533 0.0
> AT1G16858.1 | Symbols: CPuORF55 | conserved peptide upstream
open reading frame 55 | chr1:5767300-5770602 FORWARD LENGTH=2258
Length=2258
Score = 2460 bits (1332), Expect = 0.0
Identities = 1417/1459 (97%), Gaps = 2/1459 (0%)
Strand=Plus/Plus
Query 4 TTCTTTAAGTAACCAAAATGGGTTCGAGATACCCATCTCATCAGCTCAGCAATGGACTAT 63
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 398 TTCTTTAAATCACCAAAATGGGTTCGAGATACCCATCTCATCAGCTCAGCAATGGGCTAT 457
Query 64 TTGTGTCTGGTCGGCCTGAGCAACCCAAAGAAAGGCCTCCAACTATGAGTGCAGTAGCCA 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 458 TTGTGTCTGGTCGGCCTGAGCAACCCAAAGAAAGGGCTCCAACTATGAGTGCAGTAGCCA 517
Query 124 TGCCTTACACGGGTGGCGACATCAAGAGATCAGGAGAATTGGGGAAGATGTTTGATATCC 183
|||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 518 TGCCTTACACTGGTGGTGATATCAAGAGATCAGGAGAATTGGGGAAGATGTTTGATATTC 577
Query 184 CAGCAGATGGTACTAAGTCTAGGAAGTCTGGTCCCATACCTGGTGCTCCTTCAAGGTCTG 243
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 578 CAGCAGATGGGACTAAGTCCAGGAAGTCTGGTCCCATACCAGGTGCTCCTTCAAGGTCTG 637
Query 244 GCTCATTTGCAGGAACTGCACAATCTGGTCCAGGTGCTCCTATGGCCACTGGCCGTATGT 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 638 GCTCATTTGCAGGAACTGCACAATCAGGTCCAGGTGCTCCTATGGCCACTGGCCGTATGT 697
Query 304 CTGGCTCTTTAGCTTCTGCTGGCTCTGTTTCAATGAAGAAAACTAATTCCGGACCTTTAT 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 698 CTGGCTCTTTAGCTTCTGCTGGCTCTGTTTCAATGAAGAAAACGAATTCCGGACCATTAT 757
Query 364 CTAAGCATGGAGAGCCTTTAAAGAAATCATCTGGCCCTCAATCTGGTGGTGTAACTCGGC 423
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 758 CTAAGCATGGAGAGCCTTTGAAGAAATCATCTGGCCCTCAATCTGGTGGTGTAACTCGCC 817
Query 424 AAAATTCCGGTTCTATTCCTATTCTTCCGGCTACAGGTCTCATAACCTCTGGGCCTATTA 483
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 818 AAAATTCTGGTTCTATTCCTATTCTTCCAGCTACAGGTCTCATTACCTCTGGGCCTATTA 877
Query 484 CATCGGGCCCTCTGAATTCATCTGGGGCTCCCAGGAAGGTTTCTGGTCCACTAGACTCTT 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CATCAGGCCCTCTGAATTCATCTGGGGCTCCCAGGAAGGTTTCTGGTCCACTAGACTCTT 937
Query 544 CTGGTTTGATGAAGTCACATATCCCTTCTGTTGTCCACAACCAGGCGGTAACTACCCTTG 603
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 938 CTGGTTTGATGAAGTCACATATGCCTACTGTTGTCCACAACCAGGCGGTAACTACCCTTG 997
Query 604 GTCCAGAAGATGACTTTTCCTGCCTGAAGAGCTTCCCAAAGCCTGTGCTGTGGCTGGTTG 663
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 998 GTCCAGAAGATGACTTTTCCTGCCTGAAGAGCTTTCCAAAGCCTGTGCTGTGGCTGGTTG 1057
Query 664 TTCTTATATTCATAATGGGGTTCCTTGCTGGAGGCTTCATTCTTGGTGCAGTTCACAACC 723
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TTCTTATATTCATTATGGGGTTCCTTGCTGGAGGCTTCATTCTTGGTGCAGTTCACAACC 1117
Query 724 CAATTCTCCTCGTTGTTGTCGCGATCTTGTTTACAGTTGTTGCTGCGCTTTTCATTTGGA 783
|||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1118 CAATTCTCCTTGTTGTTGTCGCCATCTTGTTCACAGTTGTTGCTGCACTTTTCATTTGGA 1177
Query 784 ATATTTGTTGGGGGAGACGTGGTATCACAGATTTCATTGCTCGTTATCCTGATGCTGATC 843
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ATATTTGTTGGGGAAGACGTGGTATCACAGATTTCATTGCTCGTTATCCTGATGCTGATC 1237
Query 844 TTAGAACTGCCAAAAATGGTCAATACGTGAAGGTCACTGGGGTGGTTACTTGTGGTAATG 903
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1238 TTAGAACTGCCAAAAATGGTCAACACGTGAAGGTCACTGGGGTGGTAACTTGTGGTAATG 1297
Query 904 TACCGCTTGAGTCATCCTTCCACAGAGTTCCTAGATGTGTGTACACATCGACATGTCTAT 963
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1298 TACCGCTTGAGTCATCCTTCCACAGAGTTCCCAGATGTGTGTACACATCGACATGTCTAT 1357
Query 964 ATGAGTATCGTGGATGGGGTTCGAAACCAGCCAATTCTTCCCATCGTCACTTCACATGGG 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 ATGAGTATCGTGGATGGGGTTCGAAACCAGCCAATTCTTCCCATCGTCACTTCACATGGG 1417
Query 1024 GACTGAGATCATCAGAGAGACATGTGGTGGACTTTTACATCTCTGATTTCCAGTCTGGGC 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GACTGAGATCATCAGAGAGACATGTGGTGGACTTTTACATCTCTGATTTCCAGTCTGGGC 1477
Query 1084 TCAGAGCCTTAGTCAAAACCGGAAGCGGTGCAAAGGTAACACCTCTTGTAGATGATTCTG 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TCAGAGCCTTAGTCAAAACCGGAAGCGGTGCAAAGGTAACACCTCTTGTAGATGATTCTG 1537
Query 1144 TTGTCATCGATTTTAAGCAAGGAAGCGAGCAAGTGTCTCCCGATTTTGTTA-GATGGTTA 1202
|||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1538 TTGTCATCGACTTCAAGCAAGGAAGCGAGCAAGTGTCTCCCGATTTTGT-ACGATGGTTA 1596
Query 1203 AGTAAGAAGAATCTAACAAGCGATGATCGAATAATGCGGCTCAAAGAAGGGTATATAAAA 1262
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 GGCAAGAAGAATCTAACAAGCGATGATCGAATAATGCGGCTCAAAGAAGGGTATATAAAA 1656
Query 1263 GAAGGAAGCACAGTGAGTGTGATTGGAGTGGTGCAGAGAAACGATAATGTGTTGATGATA 1322
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 GAAGGAAGTACAGTGAGTGTGATTGGAGTGGTGCAGAGAAACGATAATGTGTTGATGATA 1716
Query 1323 GTTCCATCATCTGAGCCACTAGCAGCTGGTTGGCAATGGAGGAGATGCACATTCCCTACA 1382
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1717 GTTCCATCATCAGAGCCACTAGCAGCTGGTTGGCAATGGAGGAGATGCACATTCCCAACA 1776
Query 1383 AGTCTTGAAGGAATCGTATTGAGATGTGAAGACTCATCCAATGTTGATGCCATACCGGTT 1442
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AGTCTTGAAGGAATAGTATTGAGATGTGAAGACTCATCCAATGTTGATGCCATACCGGTT 1836
Query 1443 TGAGTCATCATCATCATCA 1461
|||||||||||||||||||
Sbjct 1837 TGAGTCATCATCATCATCA 1855
> AT1G16860.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:5767300-5770602 FORWARD LENGTH=2258
Length=2258
Score = 2460 bits (1332), Expect = 0.0
Identities = 1417/1459 (97%), Gaps = 2/1459 (0%)
Strand=Plus/Plus
Query 4 TTCTTTAAGTAACCAAAATGGGTTCGAGATACCCATCTCATCAGCTCAGCAATGGACTAT 63
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 398 TTCTTTAAATCACCAAAATGGGTTCGAGATACCCATCTCATCAGCTCAGCAATGGGCTAT 457
Query 64 TTGTGTCTGGTCGGCCTGAGCAACCCAAAGAAAGGCCTCCAACTATGAGTGCAGTAGCCA 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 458 TTGTGTCTGGTCGGCCTGAGCAACCCAAAGAAAGGGCTCCAACTATGAGTGCAGTAGCCA 517
Query 124 TGCCTTACACGGGTGGCGACATCAAGAGATCAGGAGAATTGGGGAAGATGTTTGATATCC 183
|||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 518 TGCCTTACACTGGTGGTGATATCAAGAGATCAGGAGAATTGGGGAAGATGTTTGATATTC 577
Query 184 CAGCAGATGGTACTAAGTCTAGGAAGTCTGGTCCCATACCTGGTGCTCCTTCAAGGTCTG 243
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 578 CAGCAGATGGGACTAAGTCCAGGAAGTCTGGTCCCATACCAGGTGCTCCTTCAAGGTCTG 637
Query 244 GCTCATTTGCAGGAACTGCACAATCTGGTCCAGGTGCTCCTATGGCCACTGGCCGTATGT 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 638 GCTCATTTGCAGGAACTGCACAATCAGGTCCAGGTGCTCCTATGGCCACTGGCCGTATGT 697
Query 304 CTGGCTCTTTAGCTTCTGCTGGCTCTGTTTCAATGAAGAAAACTAATTCCGGACCTTTAT 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 698 CTGGCTCTTTAGCTTCTGCTGGCTCTGTTTCAATGAAGAAAACGAATTCCGGACCATTAT 757
Query 364 CTAAGCATGGAGAGCCTTTAAAGAAATCATCTGGCCCTCAATCTGGTGGTGTAACTCGGC 423
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 758 CTAAGCATGGAGAGCCTTTGAAGAAATCATCTGGCCCTCAATCTGGTGGTGTAACTCGCC 817
Query 424 AAAATTCCGGTTCTATTCCTATTCTTCCGGCTACAGGTCTCATAACCTCTGGGCCTATTA 483
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 818 AAAATTCTGGTTCTATTCCTATTCTTCCAGCTACAGGTCTCATTACCTCTGGGCCTATTA 877
Query 484 CATCGGGCCCTCTGAATTCATCTGGGGCTCCCAGGAAGGTTTCTGGTCCACTAGACTCTT 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CATCAGGCCCTCTGAATTCATCTGGGGCTCCCAGGAAGGTTTCTGGTCCACTAGACTCTT 937
Query 544 CTGGTTTGATGAAGTCACATATCCCTTCTGTTGTCCACAACCAGGCGGTAACTACCCTTG 603
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 938 CTGGTTTGATGAAGTCACATATGCCTACTGTTGTCCACAACCAGGCGGTAACTACCCTTG 997
Query 604 GTCCAGAAGATGACTTTTCCTGCCTGAAGAGCTTCCCAAAGCCTGTGCTGTGGCTGGTTG 663
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 998 GTCCAGAAGATGACTTTTCCTGCCTGAAGAGCTTTCCAAAGCCTGTGCTGTGGCTGGTTG 1057
Query 664 TTCTTATATTCATAATGGGGTTCCTTGCTGGAGGCTTCATTCTTGGTGCAGTTCACAACC 723
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TTCTTATATTCATTATGGGGTTCCTTGCTGGAGGCTTCATTCTTGGTGCAGTTCACAACC 1117
Query 724 CAATTCTCCTCGTTGTTGTCGCGATCTTGTTTACAGTTGTTGCTGCGCTTTTCATTTGGA 783
|||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1118 CAATTCTCCTTGTTGTTGTCGCCATCTTGTTCACAGTTGTTGCTGCACTTTTCATTTGGA 1177
Query 784 ATATTTGTTGGGGGAGACGTGGTATCACAGATTTCATTGCTCGTTATCCTGATGCTGATC 843
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ATATTTGTTGGGGAAGACGTGGTATCACAGATTTCATTGCTCGTTATCCTGATGCTGATC 1237
Query 844 TTAGAACTGCCAAAAATGGTCAATACGTGAAGGTCACTGGGGTGGTTACTTGTGGTAATG 903
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1238 TTAGAACTGCCAAAAATGGTCAACACGTGAAGGTCACTGGGGTGGTAACTTGTGGTAATG 1297
Query 904 TACCGCTTGAGTCATCCTTCCACAGAGTTCCTAGATGTGTGTACACATCGACATGTCTAT 963
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1298 TACCGCTTGAGTCATCCTTCCACAGAGTTCCCAGATGTGTGTACACATCGACATGTCTAT 1357
Query 964 ATGAGTATCGTGGATGGGGTTCGAAACCAGCCAATTCTTCCCATCGTCACTTCACATGGG 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 ATGAGTATCGTGGATGGGGTTCGAAACCAGCCAATTCTTCCCATCGTCACTTCACATGGG 1417
Query 1024 GACTGAGATCATCAGAGAGACATGTGGTGGACTTTTACATCTCTGATTTCCAGTCTGGGC 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GACTGAGATCATCAGAGAGACATGTGGTGGACTTTTACATCTCTGATTTCCAGTCTGGGC 1477
Query 1084 TCAGAGCCTTAGTCAAAACCGGAAGCGGTGCAAAGGTAACACCTCTTGTAGATGATTCTG 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TCAGAGCCTTAGTCAAAACCGGAAGCGGTGCAAAGGTAACACCTCTTGTAGATGATTCTG 1537
Query 1144 TTGTCATCGATTTTAAGCAAGGAAGCGAGCAAGTGTCTCCCGATTTTGTTA-GATGGTTA 1202
|||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1538 TTGTCATCGACTTCAAGCAAGGAAGCGAGCAAGTGTCTCCCGATTTTGT-ACGATGGTTA 1596
Query 1203 AGTAAGAAGAATCTAACAAGCGATGATCGAATAATGCGGCTCAAAGAAGGGTATATAAAA 1262
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 GGCAAGAAGAATCTAACAAGCGATGATCGAATAATGCGGCTCAAAGAAGGGTATATAAAA 1656
Query 1263 GAAGGAAGCACAGTGAGTGTGATTGGAGTGGTGCAGAGAAACGATAATGTGTTGATGATA 1322
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 GAAGGAAGTACAGTGAGTGTGATTGGAGTGGTGCAGAGAAACGATAATGTGTTGATGATA 1716
Query 1323 GTTCCATCATCTGAGCCACTAGCAGCTGGTTGGCAATGGAGGAGATGCACATTCCCTACA 1382
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1717 GTTCCATCATCAGAGCCACTAGCAGCTGGTTGGCAATGGAGGAGATGCACATTCCCAACA 1776
Query 1383 AGTCTTGAAGGAATCGTATTGAGATGTGAAGACTCATCCAATGTTGATGCCATACCGGTT 1442
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AGTCTTGAAGGAATAGTATTGAGATGTGAAGACTCATCCAATGTTGATGCCATACCGGTT 1836
Query 1443 TGAGTCATCATCATCATCA 1461
|||||||||||||||||||
Sbjct 1837 TGAGTCATCATCATCATCA 1855
> AT1G78882.1 | Symbols: CPuORF56 | conserved peptide upstream
open reading frame 56 | chr1:29652633-29655949 REVERSE LENGTH=2246
Length=2246
Score = 1533 bits (830), Expect = 0.0
Identities = 1240/1436 (86%), Gaps = 36/1436 (3%)
Strand=Plus/Plus
Query 19 AAATGGGTTCGAGATACCCATCTCATCAGCTCAGCAATGGACTATTTGTGTCTGGTCGGC 78
||||||||||||||||| ||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 403 AAATGGGTTCGAGATACGCATCTCACCAGCTCAGCAATGGGCTTTTTGTGTCTGGCCGGC 462
Query 79 CTGAGCAACCCAAAGAAAGGCCTCCAACTATGAG-TGCAGTAGCCATGCCTTACACGGGT 137
| |||||||||||||||| ||||||||| ||||| | ||||||||||||| ||||| |||
Sbjct 463 CAGAGCAACCCAAAGAAAAGCCTCCAACAATGAGCT-CAGTAGCCATGCCATACACCGGT 521
Query 138 GGCGACATCAAGAGATCAGGAGAATTGGGGAAGATGTTTGATA-TCCCAGCAGATGGTAC 196
|| || ||||||| ||||||||||||||||||||||||||| | ||| | | ||||| ||
Sbjct 522 GGTGATATCAAGAAATCAGGAGAATTGGGGAAGATGTTTGACATTCCGA-CTGATGGGAC 580
Query 197 TAAGTCTAGGAAGTCTGGTCCCAT-ACCTGGTGCTCCTTCAAGGTCTGGCTCATTTGCAG 255
|||||| ||||||||||| ||||| ||| | | ||| | | ||| | |
Sbjct 581 TAAGTCAAGGAAGTCTGGCCCCATAACC--G-G--------AGG-ATCG-TCA--AG-AA 624
Query 256 GAACTGCACAATCTGGTCCAGGTGCTCCT-ATGGCCACTGGCCGTATGTCTGGCTCTTTA 314
| ||| ||||| |||||| ||| ||| || || ||||| |||||||||||| ||||
Sbjct 625 GTGGTGCGCAATCAGGTCCA-GTG--CCTAAT-GCAACTGGTCGTATGTCTGGCAATTTA 680
Query 315 GCTTCTGCTGGCTCTGTTTCAATGAAGAAAACTAATTCCGGACCTTTATCTAAGCATGGA 374
||||||||||| || ||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 681 GCTTCTGCTGGTTCAAATTCAATGAAGAAAACAAATTCTGGGCCTTTGTCTAAGCATGGG 740
Query 375 GAGCCTTTAAAGAAATCATCTGGCCCTCAATCTGGTGGTGTAACTCGGCAAAATTCCGGT 434
||||||||||||||||| ||||| || ||||| ||||||||||| |||||||||||||
Sbjct 741 GAGCCTTTAAAGAAATCCTCTGGTCCGCAATCCGGTGGTGTAACAAGGCAAAATTCCGGC 800
Query 435 TCTATTCCTATTCTTCCGGCTACAGGTCTCATAACCTCTGGGCCTATTACATCGGGCCCT 494
|||||||||| || || |||||||||||||||| |||||||| ||||| ||||| |||
Sbjct 801 CCTATTCCTATACTCCCAACTACAGGTCTCATAACATCTGGGCCAATTACCTCGGGGCCT 860
Query 495 CTGAATTCATCTGGGGCTCCCAGGAAGGTTTCTGGTCCACTAGACTCTTCTGGTTTGATG 554
|| ||||||||||||||||| ||||| |||||||||| ||||||| |||||||| ||||
Sbjct 861 CTAAATTCATCTGGGGCTCCTAGGAAAATTTCTGGTCCTCTAGACTATTCTGGTTCGATG 920
Query 555 AAGTCACATATCCCTTCTGTTGTCCACAACCAGGCGGTAACTACCCTTGGTCCAGAAGAT 614
||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 921 AAGACACATATGCCTTCAGTTGTCCACAACCAGGCGGTAACTACCCTTGCTCCGGAAGAT 980
Query 615 GACTTTTCCTGCCTGAAGAGCTTCCCAAAGCCTGTGCTGTGGCTGGTTGTTCTTATATTC 674
|||||||||||| |||| |||||||| ||||||||||||||||||||| | ||||||||
Sbjct 981 GACTTTTCCTGCATGAAAAGCTTCCCCAAGCCTGTGCTGTGGCTGGTTATACTTATATTT 1040
Query 675 ATAATGGGGTTCCTTGCTGGAGGCTTCATTCTTGGTGCAGTTCACAACCCAATTCTCCTC 734
| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1041 GTGATGGGGTTCCTCGCTGGAGGCTTCATTCTTGGAGCAGTTCACAATGCAATTCTCCTC 1100
Query 735 GTTGTTGTCGCGATCTTGTTTACAGTTGTTGCTGCGCTTTTCATTTGGAATATTTGTTGG 794
| ||||| ||| ||||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 1101 ATAGTTGTGGCGGTCTTGTTCACAGTTGTTGCTGCACTTTTCATTTGGAATATTTCTTGT 1160
Query 795 GGGAGACGTGGTATCACAGATTTCATTGCTCGTTATCCTGATGCTGATCTTAGAACTGCC 854
| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1161 GAAAGACGTGGTATCACAGATTTCATCGCTCGTTATCCGGATGCTGATCTTAGAACTGCC 1220
Query 855 AAAAATGGTCAATACGTGAAGGTCACTGGGGTGGTTACTTGTGGTAATGTACCGCTTGAG 914
||||| |||||||| |||||||||||||||||||| || |||||||| || || |||||
Sbjct 1221 AAAAACGGTCAATATGTGAAGGTCACTGGGGTGGTCACCTGTGGTAACGTGCCTCTTGAA 1280
Query 915 TCATCCTTCCACAGAGTTCCTAGATGTGTGTACACATCGACATGTCTATATGAGTATCGT 974
||||||||||| ||||||||||| ||||| ||||| || || |||||||||||||| |||
Sbjct 1281 TCATCCTTCCATAGAGTTCCTAGGTGTGTTTACACGTCTACTTGTCTATATGAGTACCGT 1340
Query 975 GGATGGGGTTCGAAA-CCAGCCAATTCTTCCCATCGTCACTTCACATGGGGACTGAGATC 1033
||||||||||| ||| ||||||||| |||| ||||||| ||| |||||||||||||||||
Sbjct 1341 GGATGGGGTTC-AAAGCCAGCCAATGCTTCACATCGTCGCTTTACATGGGGACTGAGATC 1399
Query 1034 ATCAGAGAGACATGTGGTGGACTTTTACATCTCTGATTTCCAGTCTGGGCTCAGAGCCTT 1093
| ||||||| |||||||| ||||| ||||| ||||||||||| ||||||||||| || ||
Sbjct 1400 AGCAGAGAGGCATGTGGTAGACTTCTACATTTCTGATTTCCAATCTGGGCTCAGGGCATT 1459
Query 1094 AGTCAAAACCGGAAGCGGTGCAAAGGTAACACCTCTTGTAGATGATTCTGTTGTCATCGA 1153
|||||||| |||| |||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1460 GGTCAAAACTGGAAACGGTGCAAAGGTAACACCGCTTGTCGATGATTCTGTTGTCATCGA 1519
Query 1154 TTTTAAGCAAGGAAGCGAGCAAGTGTCTCCCGATTTTGTTAGATGGTTAAGTAAGAAGAA 1213
|||||||| ||||| ||||||| ||||| || ||||| || ||||| |||| |||||
Sbjct 1520 TTTTAAGCCAGGAAATGAGCAAGCCTCTCCAGACTTTGTAAGGTGGTTGGGTAAAAAGAA 1579
Query 1214 TCTAAC-AAGCGATGATCGAATAATGCGGCTCAAAGAAGGGTATATAAAAGAAGGAAGCA 1272
|||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1580 TCTAACCAAT-GATGATCGAATAATGCGGCTTAAAGAAGGGTATATCAAAGAAGGAAGCA 1638
Query 1273 CAGTGAGTGTGATTGGAGTGGTGCAGAGAAACGATAATGTGTTGATGATAGTTCC-ATC- 1330
|||| ||||||||||||||||| |||||||||||||| ||||| |||||||| || | |
Sbjct 1639 CAGTAAGTGTGATTGGAGTGGTTCAGAGAAACGATAACGTGTTAATGATAGTCCCGA-CG 1697
Query 1331 ATCTGAGCCACTAGCAGCTGGTTGGCAATGGAGGA-GATGCACATTCCCTACAAGTCTTG 1389
| | || ||| |||||||||||||||||||||| | | |||||||||||| |||||||||
Sbjct 1698 A-CAGAACCATTAGCAGCTGGTTGGCAATGGAGTAAG-TGCACATTCCCTGCAAGTCTTG 1755
Query 1390 AAGGAATCGTATTGAGATGTGAAGACTCATCCAATGTTGATGCCATACCGGTTTGA 1445
||||||| ||||||||||| ||||| ||||| || || ||||| || || || |||
Sbjct 1756 AAGGAATTGTATTGAGATGCGAAGATTCATCGAACGTAGATGCAATTCCTGTCTGA 1811
> AT1G78880.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:29652633-29655949 REVERSE LENGTH=2246
Length=2246
Score = 1533 bits (830), Expect = 0.0
Identities = 1240/1436 (86%), Gaps = 36/1436 (3%)
Strand=Plus/Plus
Query 19 AAATGGGTTCGAGATACCCATCTCATCAGCTCAGCAATGGACTATTTGTGTCTGGTCGGC 78
||||||||||||||||| ||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 403 AAATGGGTTCGAGATACGCATCTCACCAGCTCAGCAATGGGCTTTTTGTGTCTGGCCGGC 462
Query 79 CTGAGCAACCCAAAGAAAGGCCTCCAACTATGAG-TGCAGTAGCCATGCCTTACACGGGT 137
| |||||||||||||||| ||||||||| ||||| | ||||||||||||| ||||| |||
Sbjct 463 CAGAGCAACCCAAAGAAAAGCCTCCAACAATGAGCT-CAGTAGCCATGCCATACACCGGT 521
Query 138 GGCGACATCAAGAGATCAGGAGAATTGGGGAAGATGTTTGATA-TCCCAGCAGATGGTAC 196
|| || ||||||| ||||||||||||||||||||||||||| | ||| | | ||||| ||
Sbjct 522 GGTGATATCAAGAAATCAGGAGAATTGGGGAAGATGTTTGACATTCCGA-CTGATGGGAC 580
Query 197 TAAGTCTAGGAAGTCTGGTCCCAT-ACCTGGTGCTCCTTCAAGGTCTGGCTCATTTGCAG 255
|||||| ||||||||||| ||||| ||| | | ||| | | ||| | |
Sbjct 581 TAAGTCAAGGAAGTCTGGCCCCATAACC--G-G--------AGG-ATCG-TCA--AG-AA 624
Query 256 GAACTGCACAATCTGGTCCAGGTGCTCCT-ATGGCCACTGGCCGTATGTCTGGCTCTTTA 314
| ||| ||||| |||||| ||| ||| || || ||||| |||||||||||| ||||
Sbjct 625 GTGGTGCGCAATCAGGTCCA-GTG--CCTAAT-GCAACTGGTCGTATGTCTGGCAATTTA 680
Query 315 GCTTCTGCTGGCTCTGTTTCAATGAAGAAAACTAATTCCGGACCTTTATCTAAGCATGGA 374
||||||||||| || ||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 681 GCTTCTGCTGGTTCAAATTCAATGAAGAAAACAAATTCTGGGCCTTTGTCTAAGCATGGG 740
Query 375 GAGCCTTTAAAGAAATCATCTGGCCCTCAATCTGGTGGTGTAACTCGGCAAAATTCCGGT 434
||||||||||||||||| ||||| || ||||| ||||||||||| |||||||||||||
Sbjct 741 GAGCCTTTAAAGAAATCCTCTGGTCCGCAATCCGGTGGTGTAACAAGGCAAAATTCCGGC 800
Query 435 TCTATTCCTATTCTTCCGGCTACAGGTCTCATAACCTCTGGGCCTATTACATCGGGCCCT 494
|||||||||| || || |||||||||||||||| |||||||| ||||| ||||| |||
Sbjct 801 CCTATTCCTATACTCCCAACTACAGGTCTCATAACATCTGGGCCAATTACCTCGGGGCCT 860
Query 495 CTGAATTCATCTGGGGCTCCCAGGAAGGTTTCTGGTCCACTAGACTCTTCTGGTTTGATG 554
|| ||||||||||||||||| ||||| |||||||||| ||||||| |||||||| ||||
Sbjct 861 CTAAATTCATCTGGGGCTCCTAGGAAAATTTCTGGTCCTCTAGACTATTCTGGTTCGATG 920
Query 555 AAGTCACATATCCCTTCTGTTGTCCACAACCAGGCGGTAACTACCCTTGGTCCAGAAGAT 614
||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 921 AAGACACATATGCCTTCAGTTGTCCACAACCAGGCGGTAACTACCCTTGCTCCGGAAGAT 980
Query 615 GACTTTTCCTGCCTGAAGAGCTTCCCAAAGCCTGTGCTGTGGCTGGTTGTTCTTATATTC 674
|||||||||||| |||| |||||||| ||||||||||||||||||||| | ||||||||
Sbjct 981 GACTTTTCCTGCATGAAAAGCTTCCCCAAGCCTGTGCTGTGGCTGGTTATACTTATATTT 1040
Query 675 ATAATGGGGTTCCTTGCTGGAGGCTTCATTCTTGGTGCAGTTCACAACCCAATTCTCCTC 734
| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1041 GTGATGGGGTTCCTCGCTGGAGGCTTCATTCTTGGAGCAGTTCACAATGCAATTCTCCTC 1100
Query 735 GTTGTTGTCGCGATCTTGTTTACAGTTGTTGCTGCGCTTTTCATTTGGAATATTTGTTGG 794
| ||||| ||| ||||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 1101 ATAGTTGTGGCGGTCTTGTTCACAGTTGTTGCTGCACTTTTCATTTGGAATATTTCTTGT 1160
Query 795 GGGAGACGTGGTATCACAGATTTCATTGCTCGTTATCCTGATGCTGATCTTAGAACTGCC 854
| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1161 GAAAGACGTGGTATCACAGATTTCATCGCTCGTTATCCGGATGCTGATCTTAGAACTGCC 1220
Query 855 AAAAATGGTCAATACGTGAAGGTCACTGGGGTGGTTACTTGTGGTAATGTACCGCTTGAG 914
||||| |||||||| |||||||||||||||||||| || |||||||| || || |||||
Sbjct 1221 AAAAACGGTCAATATGTGAAGGTCACTGGGGTGGTCACCTGTGGTAACGTGCCTCTTGAA 1280
Query 915 TCATCCTTCCACAGAGTTCCTAGATGTGTGTACACATCGACATGTCTATATGAGTATCGT 974
||||||||||| ||||||||||| ||||| ||||| || || |||||||||||||| |||
Sbjct 1281 TCATCCTTCCATAGAGTTCCTAGGTGTGTTTACACGTCTACTTGTCTATATGAGTACCGT 1340
Query 975 GGATGGGGTTCGAAA-CCAGCCAATTCTTCCCATCGTCACTTCACATGGGGACTGAGATC 1033
||||||||||| ||| ||||||||| |||| ||||||| ||| |||||||||||||||||
Sbjct 1341 GGATGGGGTTC-AAAGCCAGCCAATGCTTCACATCGTCGCTTTACATGGGGACTGAGATC 1399
Query 1034 ATCAGAGAGACATGTGGTGGACTTTTACATCTCTGATTTCCAGTCTGGGCTCAGAGCCTT 1093
| ||||||| |||||||| ||||| ||||| ||||||||||| ||||||||||| || ||
Sbjct 1400 AGCAGAGAGGCATGTGGTAGACTTCTACATTTCTGATTTCCAATCTGGGCTCAGGGCATT 1459
Query 1094 AGTCAAAACCGGAAGCGGTGCAAAGGTAACACCTCTTGTAGATGATTCTGTTGTCATCGA 1153
|||||||| |||| |||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1460 GGTCAAAACTGGAAACGGTGCAAAGGTAACACCGCTTGTCGATGATTCTGTTGTCATCGA 1519
Query 1154 TTTTAAGCAAGGAAGCGAGCAAGTGTCTCCCGATTTTGTTAGATGGTTAAGTAAGAAGAA 1213
|||||||| ||||| ||||||| ||||| || ||||| || ||||| |||| |||||
Sbjct 1520 TTTTAAGCCAGGAAATGAGCAAGCCTCTCCAGACTTTGTAAGGTGGTTGGGTAAAAAGAA 1579
Query 1214 TCTAAC-AAGCGATGATCGAATAATGCGGCTCAAAGAAGGGTATATAAAAGAAGGAAGCA 1272
|||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1580 TCTAACCAAT-GATGATCGAATAATGCGGCTTAAAGAAGGGTATATCAAAGAAGGAAGCA 1638
Query 1273 CAGTGAGTGTGATTGGAGTGGTGCAGAGAAACGATAATGTGTTGATGATAGTTCC-ATC- 1330
|||| ||||||||||||||||| |||||||||||||| ||||| |||||||| || | |
Sbjct 1639 CAGTAAGTGTGATTGGAGTGGTTCAGAGAAACGATAACGTGTTAATGATAGTCCCGA-CG 1697
Query 1331 ATCTGAGCCACTAGCAGCTGGTTGGCAATGGAGGA-GATGCACATTCCCTACAAGTCTTG 1389
| | || ||| |||||||||||||||||||||| | | |||||||||||| |||||||||
Sbjct 1698 A-CAGAACCATTAGCAGCTGGTTGGCAATGGAGTAAG-TGCACATTCCCTGCAAGTCTTG 1755
Query 1390 AAGGAATCGTATTGAGATGTGAAGACTCATCCAATGTTGATGCCATACCGGTTTGA 1445
||||||| ||||||||||| ||||| ||||| || || ||||| || || || |||
Sbjct 1756 AAGGAATTGTATTGAGATGCGAAGATTCATCGAACGTAGATGCAATTCCTGTCTGA 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5