BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920600
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16930.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 2102 0.0
> AT1G16930.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:5789987-5791534 FORWARD LENGTH=1350
Length=1350
Score = 2102 bits (1138), Expect = 0.0
Identities = 1289/1361 (95%), Gaps = 13/1361 (1%)
Strand=Plus/Plus
Query 21 ATGGATGTTGAGAA-CTCTGTCAAAGAGAAGCAGAGGAACTCCGATAGGATAAGCAATTT 79
||||||| ||| || |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGATGATGA-AACCTCTGTTAAAGAGAAGCAAAGGAACTCCGATAGGATAAGCAATTT 59
Query 80 ACCTGATTCTTTGTTATGTCAGATTCTCTCAGATCTCTCCACAAAAGAATCGGTTTGCAC 139
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ACCTGATTCCTTGTTATGTCAGATTCTCTCAGATCTCTCCACAAAAGAATCGGTTTGCAC 119
Query 140 AAGCGTTTTATCAAAACGATGGAGAAGTCTCTGGTTACATGTTCCTGCACTGGATTTGGA 199
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct 120 AAGCGTTTTATCAAAACGATGGAGAAATCTCTGGTTACATGTTCCTGTATTGGATTTGGA 179
Query 200 TTCCAATAACTTCCCAGATGATGATGTTTTTGTGAGTTTCGTAAACAGGTTTCTGGTTTC 259
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 180 TTCCAATAACTTCCCAGATGATGATGTTTTTGTGAGTTTCGTAAATAGGTTTCTGGGTTC 239
Query 260 TGAAAATGAGCAACACTTGGAGAGATTCAAGTTGATCTATGAGGTTAATGAGCATGATGC 319
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TGAAAATGAGCAACACTTGGAGAGATTCAAGTTGATCTATGAGGTTAATGAGCACGATGC 299
Query 320 TTCTCGGTTCAAGTCTTGGATCAATGCTGTGATTAAGCGTAGAGTTTGTCATTTTAATGT 379
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCTCGTTTCAAGTCTTGGATCAATGCTGTGATTAAGCGTAGAGTTTGTCATTTTAATGT 359
Query 380 TCATAATGAGGTGgatgatgatgatgatgatgatgaGTTAGTTAAGATGCCTTTATCTCT 439
||||||||| | | || ||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TCATAATGA----G--G-TG--GATGATGATGACGAGTTAGTTAAGATGCCTTTATCTCT 410
Query 440 CTACTCTTGTGAAAGCTTGGTGAACTTACAGCTCTACCGCGTAGTCTTGGATCATCCCGA 499
||| || |||||||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 411 CTATTCATGTGAAAGATTGGTGAACTTACAGCTCTACCGCGTAGCCTTGGATCATCCGGA 470
Query 500 ATCTGTTTCCCTGCCCTGTGTCAAGATTGTGCATCTTGATATGGTCAAGTACGATGCTGA 559
||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 471 ATCTGTTTCGCTGCCTTGTGTCAAGATTATGCATCTTGATATGGTCAAGTACGATGCTGA 530
Query 560 TTCGACTCTAGAGAGGCTAATATCAGGTTGTTCTGTTCTGGAAGAGTTAACCATAGTTCG 619
||||||||| |||| ||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 531 TTCGACTCTGGAGATTCTAATATCAGGTTGTCCAGTTTTGGAAGAGTTAACCATAGTTCG 590
Query 620 TGATCCCAATGATTCTCTACAAGTTGTGTGTGTGCGTTCCAAGTCTCTAAAAAGCTTCAA 679
|||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 591 TGATCCCAATGATTCTCTTGAAGTTGTGTGTGTGCGTTCCCAGTCTTTAAAAAGCTTCAA 650
Query 680 GATAGAGTGTGAGCGCTACGAAAGTAAAAATCATGTTGTTGA-AATCGATGCTCCAAGAC 738
|||||| | |||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 651 GATAGATTCTGAGCGCTACGAAAGTCAAAATCATGTTGTT-ACAATCGATGCTCCAAGAC 709
Query 739 TCGAGTATATGAATCTTTGTGATCATCGATCTGACAGCTTCATAATACACAATATTGGCC 798
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 710 TTGAGTATATGAATCTTTGTGATCATCGATCTGACAGCTTCATAATACACAACATTGGCC 769
Query 799 CCTTTGCAAAGGTAGATATTGATGTTATCTTTAATGTGGAATATAATGATCCATTGGAAC 858
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 770 CCTTTGCAAAGGTAGATATCGATGTTATCTTTAATGTCGAATATAATGATCCATTGGAAC 829
Query 859 CAGATGATTCTTCCAAGATAGCTATGCTAGGTAAATTCCTCACTGGGTTATCTACGGTCA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CAGATGATTCTTCCAAGATAGCTATGCTAGGTAAATTCCTCACTGGGTTATCTACGGTCA 889
Query 919 GCGAAATGGTCATATCTTCTGATACTCTACAGGTTATTCATGATTACTGCAAAATGGAAC 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GCGAAATGGTCATATCTTCTGATACTCTACAGGTTATTCATGATTACTGCAAAATGGAAC 949
Query 979 AACTACCTCAATTCTCTAACTTGTCTCGCTTGCATGCTTACTTCGAAGATTCTTGGTGGG 1038
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 950 AACTACCTCAATTCTCTAACTTGTCTCGCTTGCATGCTTACTTCGAAGATACTTGGTGGG 1009
Query 1039 AAATGTTGCCAACCTTCCTTGAGAGCTTCCCAAATCTACACTCACTCGTCATGGAATTTG 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AAATGTTGCCAACCTTCCTTGAGAGCTTCCCAAATCTACACTCACTCGTCATGGAATTTG 1069
Query 1099 ATTGCTTTCCAGATAAAGAGCAGATTGATCTTTCATCTGTACCACGATGTTTCATATCAT 1158
||||||||||||| | |||||||||||||||||||| ||| |||| ||||||| ||||||
Sbjct 1070 ATTGCTTTCCAGACACAGAGCAGATTGATCTTTCATATGTGCCACAATGTTTCCTATCAT 1129
Query 1159 CTCTTGAGTTTGTTCACCTAAAGACACCGTTTGTTGTAAACATGCAAAAGGAAGGGAGAC 1218
|||||||||||||||| | ||||| || | ||||| ||||||||||||||||||||||
Sbjct 1130 CTCTTGAGTTTGTTCATTTGAAGACTCCATACGTTGTTAACATGCAAAAGGAAGGGAGAC 1189
Query 1219 CACTCACAGGAACATCAAGTAAGATGAAATTAGCAAAGTACTTTCTAGAGAATGGTGCAG 1278
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1190 CGCTCACAGGAACATCAAGTAAGAGGAAATTAGCAAAGTACTTTCTAGAGAATGGTGCAG 1249
Query 1279 CTCTCAAGAAACTGACAGTAAGTGCGAGTTTCTGTAACATTATCAACGAAATCAAATCGA 1338
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 1250 CTCTCAAGAAACTGACAGTAAGTGCGAGTTTCTGTAACATCATCGACGAAATCAAAGCGA 1309
Query 1339 TTCCAAGAAGCTCTGCGAGGTGTCAAGTTGTCATGGATTAA 1379
|||||||||||||| |||| |||||||||||||||||||||
Sbjct 1310 TTCCAAGAAGCTCTACGAGTTGTCAAGTTGTCATGGATTAA 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5