BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920601

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16950.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   488    1e-137


> AT1G16950.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: stamen; 
EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 17 proteins 
in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:5796009-5796559 FORWARD LENGTH=551
Length=551

 Score =  488 bits (264),  Expect = 1e-137
 Identities = 299/316 (95%), Gaps = 2/316 (1%)
 Strand=Plus/Plus

Query  6    AATCAATTACAGGTAATGGCTCGTCCAAGGATCTCCGTCTCGATGATTTGCTTACTGATT  65
            |||||| | ||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct  62   AATCAA-T-CAGGTAATGGCTCGTCCAAGGATCTCCATTTCGATGATTTGCTTACTCATT  119

Query  66   TTGATTGTTGGTTTTGTCTTGCAATCTTGTCAAGCTAGAAAGGTTCTAGTACCTTACCGT  125
            |||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| | 
Sbjct  120  TTGATTGTTGGTTTTGTCTTGCAATCTTCTCAAGCTAGAAAAGTTCTAGTCCCTTACGGC  179

Query  126  ACAAGCAAGGGTTTGTTTCTTAGTGCCCTACCCAAGGGCAATGTACCACCTTCGGGTCCA  185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  ACAAGCAAGGGTTTGTTTCTTAGTGCCCTACCCAAGGGCAATGTACCACCTTCGGGTCCA  239

Query  186  AGCGACAAGGGTCACACTTCTCCTCCGGATGATTCCGATCAGCGTATGGTACCGGAAAAC  245
            ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct  240  AGCGACAAGGGTCACACTTCTCCTCCGGATGATACCGACCAGCGTATGGTACCAGAAAAC  299

Query  246  TCGCCGGAGATTTACCGTCGACTGGAATCAGTCCCTAGCCCCGGTGTGGGTCATTAGACA  305
            ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||
Sbjct  300  TCGCCGGAGATATACCGTCGACTAGAATCAGTCCCTAGCCCCGGCGTGGGTCATTAGGCA  359

Query  306  CATTAATTGATTGTCG  321
            ||||||||||||||||
Sbjct  360  CATTAATTGATTGTCG  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14979789202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5