BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920616

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G17090.1 | Symbols:  | unknown protein; INVOLVED IN: biologi...   246    7e-65
  AT1G17080.1 | Symbols:  | Ribosomal protein L18ae family | chr1...   132    2e-30


> AT1G17090.1 | Symbols:  | unknown protein; INVOLVED IN: biological_process 
unknown; LOCATED IN: endomembrane system; EXPRESSED 
IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; 
Has 5 Blast hits to 5 proteins in 2 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5842216-5842882 
REVERSE LENGTH=667
Length=667

 Score =  246 bits (133),  Expect = 7e-65
 Identities = 149/157 (95%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  39   GTGATCTTCTGCATCTCCTTGTTTGCAATCAATTTAGTGTTTTGTTGTTTCACCTGCTTC  98
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct  162  GTGATCTTCTGCATCTCCTTGTTTGCAATCAATTTAGTGTTTTCTTGTTTCACTTGCTTC  221

Query  99   TCTATTCTTCAGATCTTCATGAAAGATGAAAACCAGGATTTCAGTGATCTCAGGAAGAAT  158
            || |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  222  TCCATTCTTCAGAGCTCCATGAAAGATGAAAACCAGGATTTCAGTGATCTCAGGAAGAAT  281

Query  159  CTTGTTGAACCAGAAGAAGCTAAACCGGATGAGAAGG  195
            ||| |||||||||| ||||||||||| ||||||||||
Sbjct  282  CTTATTGAACCAGAGGAAGCTAAACCAGATGAGAAGG  318


 Score = 71.3 bits (38),  Expect = 4e-12
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  2    TTGTAAACCAACAACCATCATGCTCAGTTTCCAAGAAG  39
            ||||||||||||||||||||||||||||||||||||||
Sbjct  99   TTGTAAACCAACAACCATCATGCTCAGTTTCCAAGAAG  136


> AT1G17080.1 | Symbols:  | Ribosomal protein L18ae family | chr1:5840269-5841606 
REVERSE LENGTH=724
Length=724

 Score =  132 bits (71),  Expect = 2e-30
 Identities = 77/80 (96%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  195  GCTATTCTTGCAACAATAGCTGTGATTCTGGGTGTATCTAAAGGAGCAGACGACTGGTGA  254
            |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  476  GCTATTCTAGCAACAATCGCTGTGATTCTGGGTGTATCTAAAGGAGCAGACGACTGGTGA  535

Query  255  TGGATCGATCATCTTGTGGG  274
            |||||| |||||||||||||
Sbjct  536  TGGATCAATCATCTTGTGGG  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12566937250


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5