BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920647
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17285.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 287 5e-77
AT1G17300.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 145 3e-34
> AT1G17285.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G17300.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr1:5920774-5921415 FORWARD LENGTH=537
Length=537
Score = 287 bits (155), Expect = 5e-77
Identities = 206/229 (90%), Gaps = 9/229 (4%)
Strand=Plus/Plus
Query 1 TTTACAAGAAGAGAACTCACAATGAAGAGATACTGTTCAGCGGCTTTGGTTCTGTTACTT 60
||| ||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||
Sbjct 102 TTT-CAAGAAGAGAACTCAGAATGAAGAGATGCTGTTCAGTGGCTCTGGTTCTGTTACTT 160
Query 61 GTAGCTTTCTTTAGCAGCAAGCATAGTGTAGAGGGCCGTTCTCTGTTAAC----ACA-AT 115
||||||||||||||||||||| |||||||||| || |||||||||||||| ||| ||
Sbjct 161 GTAGCTTTCTTTAGCAGCAAGTATAGTGTAGAAGGACGTTCTCTGTTAACGATGACACAT 220
Query 116 CCG-GTCAAGCCGTGAGAGATTTGCATATAAGCAAGGAGATGAAGAAAGAGCCACTTAGA 174
|| ||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 221 TCGAGTCAAGCTGTGAGAGATTTGCCTGTAAGCAAGGAGATGAAGAAAGAGCCACTTA-A 279
Query 175 GG-AGAAAAAGATAGCTTCAGAAGAATCCCAAGTACTGGCTCAAACCCT 222
|| |||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 280 GGGAGAAAATGATAGCTTCAGAAGAATCCCAAGGAGTGGCTCAAACCCT 328
> AT1G17300.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G17285.1);
Has 27 Blast hits to 27 proteins in 4 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5926994-5927784
FORWARD LENGTH=695
Length=695
Score = 145 bits (78), Expect = 3e-34
Identities = 104/116 (90%), Gaps = 4/116 (3%)
Strand=Plus/Plus
Query 109 ACACAATCCG-GTCAAGCCGTGAGAGATTTGCATATAAGCAAGGAGATGAAGAAAGAGCC 167
|||| || || ||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 4 ACAC-ATTCGAGTCAAGCTGCGAGAGATTTGCATGTAAGCAAGGAGATGAAGAAAGAGCC 62
Query 168 ACTTAGAGG-AGAAAAAGATAGCTTCAGAAGAATCCCAAGTACTGGCTCAAACCCT 222
||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 63 ACTTA-AGGGAGAAAAAGATAGCTTAAGAAGAATCCCAAGGGGTGGCTCAAACCCT 117
Score = 113 bits (61), Expect = 1e-24
Identities = 120/145 (83%), Gaps = 17/145 (12%)
Strand=Plus/Plus
Query 231 TTCTTCGGATATGTCTGCTTCTCAGTCCTCTTCCTCTC-TCACCGTAACTCTTGACTCCA 289
|||||| ||||| ||||||||| | ||||||||||||| || ||||||||||||||||||
Sbjct 228 TTCTTCCGATATCTCTGCTTCTGATTCCTCTTCCTCTCTTC-CCGTAACTCTTGACTCCA 286
Query 290 TCAATACCAAG-T----A--T--G------CTGTCCGTGGGGAAATTGTCAACATTGGTC 334
||||||||||| | | | | |||||||||| |||||| ||||||||||||
Sbjct 287 TCAATACCAAGGTTCTCAAATATGAGTATGCTGTCCGTGGAGAAATTATCAACATTGGTC 346
Query 335 AGTGATGAGACTGCATGTGTTGAGG 359
| ||||||||||| |||||||||||
Sbjct 347 AATGATGAGACTGGATGTGTTGAGG 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16889963664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5