BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920656
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1... 2185 0.0
> AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein
1B | chr1:5951542-5955037 REVERSE LENGTH=1772
Length=1772
Score = 2185 bits (1183), Expect = 0.0
Identities = 1258/1295 (97%), Gaps = 2/1295 (0%)
Strand=Plus/Plus
Query 7 TTTCCCC--GAGAGAAAATGCAGAGGTTAAagcagcagcagcaacagcaacaagttatga 64
||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 196 TTTCCCCGAGAGAGAAAATGCAGAGGTTGAAGCAGCAGCAGCAGCAGCAACAAGTTATGA 255
Query 65 tgcagcaagctcttatgcagcaacagTCTCTCTACCATCCGGGTCTCCTTGCCCCGCCAC 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 256 TGCAGCAAGCTCTTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCAC 315
Query 125 AGATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 AGATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCA 375
Query 185 GTGTGTATGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTTTTTG 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GTGTGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTTTTTG 435
Query 245 CTAGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGTCTTCATATGGGT 304
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 436 CTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGTCTTCTTATGGGT 495
Query 305 TTGTCCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATTCTTTCTCTCAATGGAAGGC 364
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 496 TTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGC 555
Query 365 ATTTGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCTAGTGGCCAGAGGGAGGATA 424
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 556 ATTTGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGAGGATA 615
Query 425 CCTCAAGTCACTTCAATATATTTGTTGGGGATTTGAGTCCGGAGGTTACTGATGCAATGC 484
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CATCAAGTCACTTCAATATATTTGTTGGGGATTTGAGTCCGGAGGTTACTGATGCAATGC 675
Query 485 TGTTTAATTGCTTCTCTGTCTACCCGAGTTGCTCGGATGCAAGAGTTATGTGGGATCAGA 544
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 676 TGTTTACTTGCTTCTCTGTCTACCCGACTTGCTCGGATGCAAGAGTTATGTGGGATCAGA 735
Query 545 AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCGTTCCGTAACCAGCAGGATGCCCAGA 604
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 736 AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGGATGCCCAGA 795
Query 605 CTGCAATAGATGAAATAACTGGGAAATGGCTTGGTTCCAGGCAGATACGCTGCAACTGGG 664
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 796 CTGCAATAGATGAGATAACTGGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGG 855
Query 665 CGACAAAAGGAGCCACTTCTGGTGAGGACAAACAGAGCTCTGATTCCAAAAGTGTCGTGG 724
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 856 CGACAAAGGGAGCCACTTCTGGTGAGGACAAACAGAGCTCTGATTCCAAAAGCGTCGTGG 915
Query 725 AACTTACCAGTGGTGTCTCGGAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AACTTACCAGTGGTGTCTCGGAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGA 975
Query 785 ACAATGCTCAGTACACGACTGTTTACGTCGGTAATCTTGCTCCAGAGGTGTCTCAGGTTG 844
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 976 ACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGGTGTCCCAGGTTG 1035
Query 845 ATCTTCACCGCCACTTTCATTCCCTCGGTGCTGGGGTCATAGAGGAAGTCCGTGTTCAAA 904
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1036 ATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTCATAGAGGAAGTCCGTGTTCAAA 1095
Query 905 GAGACAAAGGTTTCGGATTTGTGAGATACTCTACTCATGTAGAGGCAGCCCTCGCTATTC 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GAGACAAAGGTTTCGGATTTGTGAGATACTCTACTCATGTAGAGGCAGCCCTCGCTATTC 1155
Query 965 AGATGGGAAATACGCATTCCTACCTCAGTGGCAGGCAAATGAAGTGTTCTTGGGGAAGCA 1024
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1156 AGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAGTGTTCTTGGGGAAGCA 1215
Query 1025 AGCCAACTCCACCAGGAACAGCTTCAAACCCGCTTCCTCCACCAGCTCCTGCACCAATCC 1084
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AGCCAACTCCAGCAGGAACAGCTTCAAACCCGCTTCCTCCACCAGCTCCTGCACCAATCC 1275
Query 1085 CGGGATTCTCAGCCAGCGATCTCTTGGCTTACGAGAGGCAACTAGCGATGAGCAAGATGG 1144
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 CGGGATTCTCAGCGAGTGATCTCTTGGCTTACGAGAGGCAACTAGCGATGAGCAAGATGG 1335
Query 1145 CAGGAATGAATCCGCTGATGCATCACCCGCAGGGACAACATGCTCTTAAACAAGCTGCAA 1204
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1336 CAGGAATGAATCCGATGATGCATCACCCGCAGGGACAACATGCTTTTAAACAAGCTGCAA 1395
Query 1205 TGGGAGCCACTGGCTCAAACCAAGCAATATATGACGGTGGTTTCCAGAACGCGCAGCAGC 1264
||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1396 TGGGAGCCACTGGTTCAAACCAGGCAATATATGACGGTGGTTACCAGAACGCGCAGCAGC 1455
Query 1265 TCATGTACTACCAGTGAGATCTTCCTTGGAGCCGT 1299
||||||||||||||| |||||||||| ||||||||
Sbjct 1456 TCATGTACTACCAGTAAGATCTTCCTCGGAGCCGT 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5