BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920668

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G17490.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   379    7e-105


> AT1G17490.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G72690.1); 
Has 57 Blast hits to 45 proteins in 9 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6008589-6009420 
FORWARD LENGTH=569
Length=569

 Score =  379 bits (205),  Expect = 7e-105
 Identities = 248/267 (93%), Gaps = 9/267 (3%)
 Strand=Plus/Plus

Query  11   AAGATCATCCATGGCGGAACCAAAACAAAGCTCTCTTTCTGAGTCAGAGGTGAAGACAAA  70
            ||||||||  |||||||||||||||||||||||||||||    |  ||||||||||||||
Sbjct  71   AAGATCATTAATGGCGGAACCAAAACAAAGCTCTCTTTC----T--GAGGTGAAGACAAA  124

Query  71   TGTGATTGGAAGCAGCAAAGAAGAGAAAGAATCGATGTTTCATGGGAAAGAGACTCATGG  130
            ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  125  TGTGATTGGAAGCAGAAAAGAAGAGAAGGAATCGATGTTTCATGGGAAAGAGACTCATGG  184

Query  131  AAGAAGTGAAGACATTGATGAGAAGACAAAAGTTGATGATGTTAAAGGACCTGGTGTTCT  190
            |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct  185  AAGAAGTGAAGACATTGATGAGAAGACAAGGGTTGATGATGTTAAAGGACCTGGTGTTCT  244

Query  191  CGGGCGTATGAAGGAAGAAATGGAAGCCATTGTTGACGCTGTTACTCCTACCAAAAGTTC  250
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  245  CGGGCGTATGATGGAAGAAATGGAAGCCATTGTTGACGCTGTTACTCCTAACAAAAGTTC  304

Query  251  TGACAAGTGAAGAAATGATTGGTTTCG  277
            |||||||| || || ||||| || |||
Sbjct  305  TGACAAGT-AA-AA-TGATTAGTATCG  328



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12868543744


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5