BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920671

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G25260.1 | Symbols:  | Ribosomal protein L10 family protein ...   117    1e-25


> AT1G25260.1 | Symbols:  | Ribosomal protein L10 family protein 
| chr1:8853959-8855872 REVERSE LENGTH=1018
Length=1018

 Score =  117 bits (63),  Expect = 1e-25
 Identities = 82/91 (90%), Gaps = 1/91 (1%)
 Strand=Plus/Plus

Query  1    TTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTGCTGCTTCTGATGAA  60
            ||||||||||||||||||||||||||||||||||||||||||||| ||||    ||||||
Sbjct  302  TTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTTCTGCAGAAGATGAA  361

Query  61   TTCTGTTATGGTATCTACAA-GTCTCCAAGC  90
             || ||| |||||||||||| ||||||||||
Sbjct  362  CTCCGTTCTGGTATCTACAAAGTCTCCAAGC  392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5