BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920672
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17520.1 | Symbols: | Homeodomain-like/winged-helix DNA-bin... 1419 0.0
> AT1G17520.1 | Symbols: | Homeodomain-like/winged-helix DNA-binding
family protein | chr1:6024636-6027385 REVERSE LENGTH=1375
Length=1375
Score = 1419 bits (768), Expect = 0.0
Identities = 881/935 (94%), Gaps = 10/935 (1%)
Strand=Plus/Plus
Query 3 CGAAAACAGAAGCGTAGAGATGGGAAACCAGAAGCTTAAATGGACGGCGGAGGAAGAGGA 62
||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 143 CGATAATAGAAGCGTAGAGATGGGAAATCAGAAGCTCAAATGGACGGCGGAGGAAGAGGA 202
Query 63 GGCTTTACTCGCCGGAGTTGGGAAGCATGGCCCAGGAAAGTGGAAGAATATTCTCCGCGA 122
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 203 GGCGTTACTCGCCGGAGTTAGGAAGCATGGCCCTGGAAAGTGGAAGAATATTCTCCGCGA 262
Query 123 TCCTGAATTCGCTGAGCAGCTCTCTAGTCGCTCTAACATCGACCTCAAGGATAAGTGGCG 182
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 263 TCCTGAATTAGCTGAGCAGCTCTCTAGTCGCTCTAACATCGACCTCAAGGATAAATGGCG 322
Query 183 TAATTTAAGTGTTGCCCCTGGTATTCAAGGCTCTAAGGATAAGATACGGACACCAAAAAT 242
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TAATTTAAGTGTTGCTCCTGGTATTCAAGGCTCTAAGGATAAGATACGGACACCAAAAAT 382
Query 243 CAAAGCTGCTGCTTTTCATCTGGCTTCCGCTGCGGCTGCCGCTATCT-TGACTCCTCCTC 301
||||||||||||||||||||||||| ||||||| ||||||||||| | | |||||| |||
Sbjct 383 CAAAGCTGCTGCTTTTCATCTGGCTGCCGCTGCTGCTGCCGCTAT-TGTAACTCCTACTC 441
Query 302 ATAGTGCTCACTCTTCTCCAGTTGCTGTTCTTCCCCGAAGTGGATCTTCTGATTTGAGCA 361
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 442 ATAGTGGTCACTCTTCTCCAGTTGCTACTCTTCCCCGAAGTGGATCTTCTGATTTGAGCA 501
Query 362 TTGATGATAGTTTTAACATTGTAGTTGATCCAAAGAATGCTCCCAGGTATGATGGAATGA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TTGATGATAGTTTTAACATTGTAGTTGATCCAAAGAATGCTCCCAGGTATGATGGAATGA 561
Query 422 TATTTGAAGCTCTTTCAGCCTTGACGGATGCTAATGGATCTGATGTCAGTGCAATTTTCA 481
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 562 TATTTGAAGCTCTTTCAAACTTGACGGATGCTAATGGATCTGATGTCAGCGCAATTTTCA 621
Query 482 GCTTCATCGAGCAACGACATGAAGTGCCACCAAATTTCAGAAGGATCCTTAGTTCAAGAT 541
|||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 622 ACTTCATTGAGCAACGACAAGAAGTGCCACCAAATTTCAGGAGGATGCTTAGTTCAAGAT 681
Query 542 TGAGGAGGCTTGCTGCTCAGGGAAAACTTGAAAAGGTTAGCCACTTAAAATCAACACAGA 601
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 682 TGAGGAGGCTTGCAGCTCAGGGAAAGCTTGAAAAGGTTAGCCACTTAAAATCAACACAGA 741
Query 602 ACTTCTATAAGATGAATGATAATAGCTTGGTAACAA-GAACAACACCTGTAGCGAGACCA 660
|||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||
Sbjct 742 ACTTCTATAAGATGAATGATAATAGCTTGGTA-CAAAGAACACCACATGTAGCGAGACCA 800
Query 661 AAAGAGAGCAACACGAAAGCCCGGCAGCAGACAAACAGTCAAGGACCCTCTATTTCACAG 720
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 801 AAAGAGAGCAACACGAAATCCCGGCAGCAGACAAACAGTCAGGGACCCTCTATTTCACAG 860
Query 721 CAGATGGTTGCTGAAGCTTCAATAACAGCAGCTTATAAGCTCGTGGAAGTGGAGAACAAA 780
||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 861 CAGATTGTTG---AAGCTTCAATAACAGCAGCTTATAAGCTCGTAGAAGTAGAGAACAAA 917
Query 781 TTAGATGTGTCGAAAGGAGCTTCAGAAGAGATATACAGATTGATAAAACTGGCAGAAGTT 840
||||||||||||||||||||| ||||||||||| | ||| |||| |||||||||||||
Sbjct 918 TTAGATGTGTCGAAAGGAGCTGCAGAAGAGATAGAGAGACTGATGAAACTGGCAGAAGAG 977
Query 841 GCTGATGATATGCTAGTGATAGCGAGAGAGATGCACGAAGAATGTAGTCAAGGAAAGATT 900
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 978 GCTGATGAGATGCTAGTGATAGCGAGAGAGATGCACGAAGAATGTAGTCAGGGAAAGATT 1037
Query 901 ATGTACTTAAATTGAGGAGGTTGATGGAACAAAAG 935
|||||||| |||||||| |||||||||||||||
Sbjct 1038 ATGTACTTGAATTGAGG---TTGATGGAACAAAAG 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5