BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920676
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17550.1 | Symbols: HAB2 | homology to ABI2 | chr1:6034362-6... 2532 0.0
AT1G72770.1 | Symbols: HAB1 | HYPERSENSITIVE TO ABA1 | chr1:273... 911 0.0
> AT1G17550.1 | Symbols: HAB2 | homology to ABI2 | chr1:6034362-6037289
FORWARD LENGTH=2441
Length=2441
Score = 2532 bits (1371), Expect = 0.0
Identities = 1515/1584 (96%), Gaps = 11/1584 (1%)
Strand=Plus/Plus
Query 6 GAAGCAGCATAGCAACTCATGGAAGAGATCTCACCGGCAGTTGCACTGACTTTGAGTTTA 65
||||| ||||| || |||||||||||||| ||||| ||||||||||| |||||| |||||
Sbjct 538 GAAGCTGCATACCAGCTCATGGAAGAGATTTCACCTGCAGTTGCACTTACTTTGGGTTTA 597
Query 66 GCTAATACGATGTGTGACTCTGGTATCTCATCCACTTTAGATATCTCCGAGCTGGAGAAT 125
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 598 GCTAATACGATGTGTGACTCTGGAATCTCATCTACTTTCGATATCTCCGAGCTGGAGAAT 657
Query 126 GTTACTGATGCAGCTGACATGTTGTCTTATCAGAAAAGACAAAGATATAGTAATGGAGTT 185
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 658 GTTACTGATGCAGCTGACATGTTGTGTAATCAGAAAAGACAAAGATATAGTAATGGAGTG 717
Query 186 GTTGATTGTATGATGGG-AGATGTTCCAGAAGAACCAGAAGAGAAAACTTTATCTCAAGT 244
|| |||||||| ||||| || |||| |||||| || | || ||||||||| ||||
Sbjct 718 GTGGATTGTATTATGGGAAG-TGTTTCAGAAG----AG-A-AG---ACTTTATCTGAAGT 767
Query 245 GAGAAGCTTGTCTTCCGATTTTAGTGTAACTGTCCAAGAATCAGAAGAAGATGAGCCATT 304
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 768 GAGAAGTTTGTCTTCTGATTTTAGTGTAACTGTCCAGGAATCAGAAGAAGATGAGCCATT 827
Query 305 AGTATCTGATGCCACTATTATAAGCGAGGGTTTAATAGTTGTGGACGCTAGGTCTGAGAT 364
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 828 AGTATCTGATGCGACTATTATTAGCGAAGGTTTAATAGTTGTGGACGCTAGGTCTGAGAT 887
Query 365 AAGTTTGCCAGATACAGTTGAAACAGATAACGGTCGAGTTCTTGCTACCGCGATCATCCT 424
|||||||||||||||||||||||| |||||||| |||||||||||||| || || |||||
Sbjct 888 AAGTTTGCCAGATACAGTTGAAACTGATAACGGGCGAGTTCTTGCTACGGCCATTATCCT 947
Query 425 AAACGAGACAACCATAGAACAGGTTCCCACTGCAGAAGTTCTTATTACGAGTCTGAATCA 484
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 948 AAACGAGACAACCATAGAACAGGTTCCCACTGCAGAAGTCCTTATTGCGAGTCTGAATCA 1007
Query 485 CGATGTGAATATGGAGGTGGCAACTTCTGAGGTAGTTATTAGGTTGCCTGAAGAAAATCC 544
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1008 CGATGTGAATATGGAGGTGGCAACTTCTGAGGTAGTCATTAGGTTACCTGAAGAAAATCC 1067
Query 545 TAATGTAGCAAGAGGAAGCAGAAGTGTCTATGAACTAGAGTGTATACCTCTTTGGGGCAC 604
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1068 TAATGTAGCAAGAGGAAGCAGGAGTGTTTATGAACTAGAGTGTATACCTCTTTGGGGCAC 1127
Query 605 GATTTCGATTTGCGGTGGAAGATCTGAAATGGAGGATGCTGTTAGAGCTTTACCTCATTT 664
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 GATTTCAATTTGCGGTGGAAGATCTGAAATGGAGGATGCTGTTAGAGCTTTACCTCATTT 1187
Query 665 TCTCAAGATACCCATCAAAATGCTTATGGGGGATCATGAAGGGATGAGTCCAAGTCTTCC 724
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1188 TCTCAAAATACCCATCAAAATGCTTATGGGGGATCATGAAGGGATGAGTCCAAGTCTCCC 1247
Query 725 ATATCTCACTAGTCACTTCTTTGGTGTATATGATGGCCACGGAGGTGCTCAGGTTGCTGA 784
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1248 ATATCTCACTAGTCACTTCTTTGGTGTATATGATGGCCACGGAGGCGCTCAGGTTGCTGA 1307
Query 785 CTATTGCCATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAAGAGGA 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 CTATTGCCATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAAGAGGA 1367
Query 845 ATTGTGTAGGAGGAACACTGGCGAGGGCAGGCAGGTCCAGTGGGAGAAAGTCTTTGTAGA 904
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1368 ATTGTGTAGGAGGAACACTGGCGAGGGTAGGCAGGTCCAGTGGGAGAAAGTCTTTGTAGA 1427
Query 905 TTGTTACCTAAAGGTCGATGATGAGGTTAAAGGGAAAATCAACAGACCTGTTGTTGGTTC 964
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TTGTTACCTAAAAGTCGATGATGAGGTTAAAGGGAAAATCAACAGACCTGTTGTTGGTTC 1487
Query 965 TTCTGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTCGGATCAACTGCTGTGGT 1024
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1488 TTCTGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTTGGATCGACTGCTGTGGT 1547
Query 1025 TGCTTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGACTCTAGAGCAGTTTT 1084
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1548 TGCTTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGACTCAAGAGCAGTTTT 1607
Query 1085 ACTCCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCAGATAGAGAGGATGA 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 ACTCCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCAGATAGAGAGGATGA 1667
Query 1145 GTATGCAAGAATAGAAAAAGCTGGAGGAAAAGTTATACAATGGCAAGGCGCTCGTGTTTC 1204
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 GTATGCACGAATAGAGAAAGCTGGAGGAAAAGTTATACAATGGCAAGGCGCTCGTGTTTC 1727
Query 1205 TGGCGTTCTTGCCATGTCCAGGTCCATCGGTGATGAATATCTGGAGCCATATGTAATACC 1264
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1728 TGGCGTTCTTGCCATGTCCAGGTCCATCGGTGATCAATATCTGGAGCCATTTGTAATACC 1787
Query 1265 AGATCCCGAAGTGACGTTTATGCCACGAGCTAGAGAAGACGAGTGTCTTATATTGGCCAG 1324
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1788 AGATCCCGAAGTGACGTTTATGCCACGAGCTAGAGAAGACGAGTGTCTAATATTGGCCAG 1847
Query 1325 TGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGTGATTTTGCGAGGAGGCGGAT 1384
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1848 TGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGCGATTTTGCGAGGAGGCGGAT 1907
Query 1385 CTTGGCTTGGCACAAGAAGAATGGAGCATTGCCTTTAGCCGAGAGAGGTGTAGGGGAAGA 1444
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1908 CTTGGCTTGGCACAAGAAGAATGGAGCATTGCCTTTAGCTGAGAGAGGTGTAGGAGAAGA 1967
Query 1445 CCATGCGTGTCAAGCCGCGGCTGAATATCTCTCCAAACTCGCTCTTCAAAAGGGAAGCAA 1504
||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1968 CCAAGCGTGTCAAGCTGCGGCTGAATATCTCTCCAAACTCGCTATTCAAATGGGAAGCAA 2027
Query 1505 AGACAATATCTCAATCATAGTGGTCGACTTGAAAGCTCAAAGAAAGTTCAAGACCAGATC 1564
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2028 AGACAATATCTCAATCATAGTGATCGACTTGAAAGCTCAAAGAAAGTTCAAGACCAGATC 2087
Query 1565 TTGAAACAGTGTACGCTCAAGCTC 1588
||||||||||||| |||| |||||
Sbjct 2088 TTGAAACAGTGTATGCTCGAGCTC 2111
> AT1G72770.1 | Symbols: HAB1 | HYPERSENSITIVE TO ABA1 | chr1:27390022-27393281
FORWARD LENGTH=2551
Length=2551
Score = 911 bits (493), Expect = 0.0
Identities = 1024/1273 (80%), Gaps = 66/1273 (5%)
Strand=Plus/Plus
Query 324 ATAAGCGAGGGTTTAATAGTTGTGGACGCTAGG-TCTGAGA-TAAGTTTG-CCAGATACA 380
||||| ||||| || ||||||| || || ||| ||||| | |||| ||| | | |||||
Sbjct 889 ATAAGTGAGGGCTTGTTAGTTGTTGATGC-AGGCTCTGA-ATTAAGCTTGTCTA-ATACA 945
Query 381 G-T-T-GAAACAGATAACGGTCGAGTTCTTGCTACCGCGATCATCCTAAACGAGA-CAAC 436
| | | |||| ||||||||| ||||||||||| |||||||| ||| || ||| | |||
Sbjct 946 GCTATGGAAATAGATAACGGGCGAGTTCTTGCAACCGCGATTATCGTAGGCGA-ATCAAG 1004
Query 437 CATAGAACAGGTTCCCACTGCAGAAGTTCTTATTACGAGTCTGAATCACGATGTGAATAT 496
||| || ||||||||||| || ||||||||||| || || | ||| | | | | |||
Sbjct 1005 CATTGAGCAGGTTCCCACCGCGGAAGTTCTTATCGCGGGTGTAAAT--C-A-G-G-ATA- 1057
Query 497 GGAGGTGGCAACTTCTGAGGTAGTTATTAGGTTGCCTGAAGAAAATCCTAATGTAGCAAG 556
| | ||||| ||||| || ||||| ||||| || |||||| |||| | | |
Sbjct 1058 CCA-AT----ACTTCGGAGGTTGTCATTAGATTGCCAGATGAAAATAGTAAT-CATCTGG 1111
Query 557 AGGAA-GCAGAAGTGTCTATGAACTAGAGTGTATACCTCTTTGGGGCACGATTTCGATTT 615
| || | |||||||| ||||||||||| |||||||| |||||||||||| |||| |||
Sbjct 1112 TGAAAGGGAGAAGTGTTTATGAACTAGATTGTATACCGCTTTGGGGCACGGTTTCCATTC 1171
Query 616 GCGGTGGA-AGATCTGAAATGGAGGATGCTGTTAGAGC-T-TTACCTCATTTTCTCAAGA 672
|| | | |||||||| |||||||||||| || | | | | |||||||||||| || |
Sbjct 1172 AAGG-GAATAGATCTGAGATGGAGGATGCT-TTTG-CCGTGTCACCTCATTTTCTGAA-A 1227
Query 673 -TACCCATCAAAATGCTTATGGGGGATCATGAAGGG-ATGAGTCCAAGTCTTC-CATATC 729
||||||||||||||||||||||||| |||| |||| ||||||||||| | || || | |
Sbjct 1228 CTACCCATCAAAATGCTTATGGGGGACCATG-AGGGTATGAGTCCAAG-CCTCACACACC 1285
Query 730 TCACTAGTCACTTCTTT-GGTGTATATGATGGCCACGGAGGTGC-TCAGGTTGCTGACTA 787
|||| |||| || ||| ||||| |||||||| || ||||| | | |||||||||||||
Sbjct 1286 TCACCGGTCA-TTTTTTCGGTGTTTATGATGGTCATGGAGG-CCATAAGGTTGCTGACTA 1343
Query 788 TTGCC-ATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAAGAGGAAT 846
||||| | |||||| |||| | |||||||||||||||||| ||||| || ||||| ||||
Sbjct 1344 TTGCCGA-GATAGACTCCATTTTGCTTTGGCTGAAGAAATAGAACGTATAAAAGACGAAT 1402
Query 847 TGTGTAGGAGGAACACTGGCGAGGGCAGGCAGGTCCAGTGGGAGAAAGTCTTTGTA-GA- 904
| || | |||||| || || ||||| |||||||| |||||||| |||||| || | ||
Sbjct 1403 TATGCAAGAGGAATACAGGAGAGGGTAGGCAGGTGCAGTGGGATAAAGTC-TT-CACGAG 1460
Query 905 TTGTTACCTAAAGGTCGATGATGAGGTTAAAGGGAAAATCAACAGA-CCTGTTGTTGGTT 963
||||| |||| ||||||| |||| || |||| ||||| ||| || ||||||||||
Sbjct 1461 TTGTTTTCTAACTGTCGATGGTGAGATTGAAGGAAAAATTGGTAGAGCC-GTTGTTGGTT 1519
Query 964 CTTCTGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTCGGATCAACTGCTGTGG 1023
||||||||| | ||||||||| |||||| | |||| ||||| |||||||||||||| |
Sbjct 1520 CTTCTGATA--A-GGTTCTTGAGGCTGTTGCGTCTGAGACCGTAGGATCAACTGCTGTTG 1576
Query 1024 TTGCTTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGACTCTAGAGCAGTTT 1083
|||| |||||||| ||||| |||||| |||| || ||||| ||||| || || || ||||
Sbjct 1577 TTGCCTTGGTTTGCTCATCACATATAGTAGTTTCTAACTGCGGTGATTCGAGGGCGGTTT 1636
Query 1084 TACTCCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCAGATAGAGAGGATG 1143
|| |||| |||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 1637 TATTCCGTGGCAAAGAAGCCATGCCCTTGTCAGTTGATCACAAACCAGATAGAGAGGATG 1696
Query 1144 AGTATGCAAGAATAGAAAAAGCTGGAGGAAAAGTTATACAATGGCAAGGCGCTCGTGTTT 1203
| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1697 AATATGCAAGAATAGAAAATGCTGGAGGCAAAGTTATACAATGGCAAGGCGCACGTGTTT 1756
Query 1204 CTGGCGTTCTTGCCATGTCCAGGTCCATCGGTGAT-GAATATCTGGAGCCATATGTAATA 1262
||| ||||| |||||||| |||||||||||||| || |||||| |||||||||| ||
Sbjct 1757 TTGGTGTTCTCGCCATGTCTAGGTCCATCGGTGACAGA-TATCTGAAGCCATATGTGATC 1815
Query 1263 CCAGATCCCGAAGTGACGTTTATGCCACGAG-CTAGAGAAGACGAGTGTCTTATATTGGC 1321
||||| || |||||||| || ||||| || | | ||||||||||||||||| ||| | ||
Sbjct 1816 CCAGAACCGGAAGTGACATTCATGCCTCG-GTCAAGAGAAGACGAGTGTCTCATACTAGC 1874
Query 1322 CAGTGATGGACTTTGGGACGTAATGAGTAACCAAGAAG-CTTGTGATTTTGCGAGGAGGC 1380
|||||| || |||||||| ||||||| |||||||||| || | || | || ||||| |
Sbjct 1875 CAGTGACGGTCTTTGGGATGTAATGAACAACCAAGAAGTCT-GCGAAATAGCAAGGAGAC 1933
Query 1381 GGATCTTGGCT-TGGCACAAGAAGAATGGAGCATTGCCTTTAGCCGAGAGAGGTGTAGGG 1439
|||| ||| | |||||||||||||| || ||| |||| |||| |||||||| |||
Sbjct 1934 GGATATTGA-TGTGGCACAAGAAGAACGGTGCACCGCCTCTAGCAGAGAGAGGCAAAGGA 1992
Query 1440 GA-AGA-CCATGCGTGTCAAGCCGCGGCTGAATATCTCTCCAAA-CTCGCTCTTCAAAAG 1496
| ||| ||| || || |||||||| ||||| || ||||| || || ||||| |||||
Sbjct 1993 -ATAGATCCA-GCTTGCCAAGCCGCAGCTGACTACCTCTC-AATGCTTGCTCTACAAAAA 2049
Query 1497 GGAAGCAAAGACAATATCTCAATCATAGTGGTCGACTTGAAAGCTCAAAGAAAGTTCAAG 1556
||||| |||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||
Sbjct 2050 GGAAGTAAAGACAACATCTCCATCATTGTGATTGACTTGAAAGCTCAAAGAAAGTTCAAG 2109
Query 1557 ACCAGATCTTGAA 1569
|||||| | ||||
Sbjct 2110 ACCAGAACCTGAA 2122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78413251290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5