BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920693
Length=583
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17700.1 | Symbols: PRA1.F1 | prenylated RAB acceptor 1.F1 |... 822 0.0
> AT1G17700.1 | Symbols: PRA1.F1 | prenylated RAB acceptor 1.F1
| chr1:6089517-6090323 FORWARD LENGTH=807
Length=807
Score = 822 bits (445), Expect = 0.0
Identities = 538/584 (92%), Gaps = 2/584 (0%)
Strand=Plus/Plus
Query 1 TCACAAAAGAGAAAAACAATATGACAACATATGGCACCAATCCGAAGTCGTCTAACGACT 60
|||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 52 TCACGAAGGAGAAAAACAATATGACAACATATGGCACCAATCAGAAGTCGTCTAACGACT 111
Query 61 TAGCCCCAAAACTCGAGTACATCACCCGCGGCATTAACCAACAAAAAAGATCCGGTCTCG 120
||||||| || || |||||||||||||| ||||| |||||||| ||||||||||| ||||
Sbjct 112 TAGCCCCCAAGCTGGAGTACATCACCCGTGGCATCAACCAACACAAAAGATCCGGCCTCG 171
Query 121 CCACGCGCCGCCCTTGGAAGCAAATGCTCGACCTCGGCTCATTCAACTTCCCCCGCAAAC 180
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 172 CCACGCGCCGCCCTTGGAAGCAAATGCTAGACCTCGGTTCCTTCAACTTCCCCCGCAAAC 231
Query 181 TAGCCACCGTGATCAGTAGAATCAGAGCCAACACCGTCTACTTCCAGACCAATTACACCA 240
||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 232 TAGCCACCGTGATCACTAGAATCAGAGCCAACACGGTCTATTTCCAGACCAATTACACCA 291
Query 241 TTGTCGTCCTCTTCTCCGTATCTCTCAGTCTGATTTGGAATCCCTTCTCCCTCCTAATCC 300
||||||||||||||||||||| |||||| |||||||||||||||||||||||| || | |
Sbjct 292 TTGTCGTCCTCTTCTCCGTATTTCTCAGCCTGATTTGGAATCCCTTCTCCCTCTTAGTTC 351
Query 301 TAATCGCCCTACTCGGCGCATGGCTCTTCCTCTACTTCCTCCGTGATGAACCGCTCGCTG 360
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 352 TACTCGCCCTACTCGGTGCATGGCTCTTCCTCTACTTCCTCCGTGATGAACCGCTCACTG 411
Query 361 TGTTTGACCGAGAGATCGACCACCGTATCGTACTTATCGTCATGTCCGTTCTCACTCTTT 420
| |||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 412 TTTTTGACCGCGAGATTGACCACCGTATCGTACTTATAATCATGTCTGTTATCACTCTTT 471
Query 421 CGATCCTTTTCTTAACCGATGCTAAGCTCAATATTGCGGTGGCCATCGTGGCAGGTGCCG 480
| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 472 CCATCCTTTTTTTAACTGATGCGAAGCTCAATATCGCGGTGGCCATCGTGGCAGGTGCCT 531
Query 481 CGGCTGTGTTGTCTCATGCAGCTGTTAGGAAAACTGAAGATCTTTACCAAACCGACGAAG 540
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 532 TGGCTGTGTTGTCTCATGCAGCTGTTAGGAAAACTGAAGATCTTTTCCAAACCGACGAAG 591
Query 541 AAACCAGTCTTTTAAATCCCTAATTATTTTACA-ATCAAATGTT 583
||||||||||||||||||| ||| | |||| | ||||| ||||
Sbjct 592 AAACCAGTCTTTTAAATCCGTAAAAAGTTTA-ATATCAACTGTT 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28030654026
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5