BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920694
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17710.1 | Symbols: | Pyridoxal phosphate phosphatase-relat... 1323 0.0
AT1G73010.1 | Symbols: ATPS2, PS2 | phosphate starvation-induce... 592 3e-168
> AT1G17710.1 | Symbols: | Pyridoxal phosphate phosphatase-related
protein | chr1:6090560-6092027 REVERSE LENGTH=1095
Length=1095
Score = 1323 bits (716), Expect = 0.0
Identities = 847/906 (93%), Gaps = 25/906 (3%)
Strand=Plus/Plus
Query 2 TACCTATAGAAA-AGTT-TCTCTG--AGAATGGCTAACAGA-AACAACATCGTGATCGTC 56
|||||||| ||| | || | |||| ||||||||||| | | ||||||||||||||||||
Sbjct 26 TACCTATA-AAACA-TTGTATCTGATAGAATGGCTAAGA-ATAACAACATCGTGATCGTC 82
Query 57 TTTGATTTTGACAAGACAATCATCGATGTAGACAGTGATAATTGGGTTGTCGATGAACTT 116
|| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 83 TTCGATTTTGACAAGACAATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTT 142
Query 117 GGTTTCACTGAATTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGAAT 176
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 GGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGAAT 202
Query 177 CGGATGATGAAGGAGCTTCATGATCATGGTAAAACCATTGAAGAAATCAAACAAGTCCTT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 CGGATGATGAAGGAGCTTCATGATCATGGTAAAACCATTGAAGAAATCAAACAAGTCCTT 262
Query 237 AGGAGAATCCCAATTCATCCACGTGTCATCCCTGCCATCAAATCTGCTCATGCTTTAGGG 296
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 263 AGGAGAATCCCAATTCATCCACGTGTCATCCCAGCCATCAAATCTGCTCATGCTTTAGGG 322
Query 297 TGTGAGCTGAGGATAGTGAGCGACGCAAACACGTTATTCATCGAAACGATCATTGAACAT 356
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 323 TGCGAGCTGAGAATAGTGAGCGACGCAAACACGTTGTTCATCGAAACAATCATTGAACAT 382
Query 357 CTTGGGATTAGAGAGTTTTTCTCCGAGATTAACACAAATCCAGGACTTGTAGATGAACAA 416
|| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 CTCGGGATTGGTGAGTTTTTCTCCGAGATTAACACAAATCCAGGACTTGTAGATGAACAA 442
Query 417 GGAAGATTAATAGTCTCTCCTTACCATGACTTCACCAAATCTTCTCATGGTTGCTCTCGT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GGAAGATTAATAGTCTCTCCTTACCATGACTTCACCAAATCTTCTCATGGTTGCTCTCGT 502
Query 477 TGCCCTCCTAACATGTGCAAGGGTTTGATAATCGAAAGGATTCAAGCTTCTCTGACCAAA 536
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||
Sbjct 503 TGCCCTCCTAACATGTGCAAGGGTTTAATAATCGATAGGATTCAAGCTTCTCTAACGAAA 562
Query 537 GAAGGGAGGAAGACCAATATGATATATCTTGGAGATGGTGCTGGTGATTACTGTCCAAGT 596
||||||| || || ||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 563 GAAGGGAAGACGAGCAAGATGATCTATCTTGGAGATGGTGCTGGTGATTACTGTCCCAGT 622
Query 597 CTTGGACTCAAAGCTGAAGATTACATGATGCCAAGGAAGAATTTCCCGGTTTGGGATTTG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 CTTGGACTCAAAGCTGAAGATTACATGATGCCAAGGAAGAATTTCCCGGTTTGGGATTTG 682
Query 657 ATTAGTCAAAATCCCATGTTGGTTAAGGCTACCGTTAGAGATTGGACCGATGGAGAAGAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 ATTAGTCAAAATCCCATGTTGGTTAAGGCTACCGTTAGAGATTGGACCGATGGAGAAGAT 742
Query 717 ATGGAGAGGATACTAATGGAAATAATCAAC-AAGATTATATCATTAGAGGAAGAAGATGA 775
|||||||||||||||||||||||||||||| || ||||| |||| |||||||| ||| ||
Sbjct 743 ATGGAGAGGATACTAATGGAAATAATCAACGAA-ATTATGTCATCAGAGGAAGGAGAGGA 801
Query 776 CAAGGACAAGATGTTGAGCTCTGATAATTGCAAGATATCTGTTGGGATTGTTCATGAACC 835
|| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 802 GAATGACAAGATGTTGAGCTCTGAAAACTGCAAGATATCTGTTGGGATTGTTCATGAACC 861
Query 836 TATGGTGCCTCTTGCTCTTCAAGTTCCTTTAAATTTGGTTAAGTGATTGATGAAAACAAG 895
||| | | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 862 TAT--T-C------------AAGTTCCTTTAAATTTGGTCAAGTGATTGATGAAAACAAG 906
Query 896 AAATTG 901
||||||
Sbjct 907 AAATTG 912
> AT1G73010.1 | Symbols: ATPS2, PS2 | phosphate starvation-induced
gene 2 | chr1:27464572-27466256 REVERSE LENGTH=1172
Length=1172
Score = 592 bits (320), Expect = 3e-168
Identities = 590/717 (82%), Gaps = 32/717 (4%)
Strand=Plus/Plus
Query 39 AACAACATCGT-GATCGTCTTT-GATTTTGACAAGACAATCATCGATGTAGACAGTGATA 96
|||||||| || | | || ||| || || |||||||| |||||||| || || || ||||
Sbjct 110 AACAACATTGTCG-TTGT-TTTCGACTTCGACAAGACCATCATCGACGTTGATAGCGATA 167
Query 97 ATTGGGTTGTCGATGAACTTGGTTTCACTGAATTGTTCAACCAGCTTCTCCCAACAATGC 156
||||||| ||||||||||||| |||||||| |||||||| || |||||||| || ||||
Sbjct 168 ATTGGGTAATCGATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGC 227
Query 157 CTTGGAACTCTCTCATGAATCGGATGATGAAGGAGCTTCATGATCATGGTAAAACCATTG 216
|||||||| | |||||| | || ||||||||||||||||||||||| || ||||||||||
Sbjct 228 CTTGGAACACACTCATGGACCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTG 287
Query 217 AAGAAATCAAACAAGTCCTT-AGGAGAATCCCAATTCATCCACGTGTCATCCCTGCCATC 275
| || ||||||||||| ||| || | |||||||||||||||||||||| |||||||||||
Sbjct 288 AGGAGATCAAACAAGT-CTTGAGAACAATCCCAATTCATCCACGTGTCGTCCCTGCCATC 346
Query 276 AAATCTGCTCATGCTTTAGGGTGTGAGCTGAGGATAGTGAGCGACGCAAACACGTTATTC 335
|||||||| |||| ||||||||||||||| |||||||||||||| ||||||| ||| |||
Sbjct 347 AAATCTGCACATGATTTAGGGTGTGAGCTTAGGATAGTGAGCGATGCAAACATGTTTTTC 406
Query 336 ATCGAAACGATCATTGAACATCTTGGGATTAGAGAGTTTTTCTCCGAGATTAACACAAAT 395
||||| || ||| |||||||||| || ||||| || | ||||| ||||| ||| | ||
Sbjct 407 ATCGAGACCATCGTTGAACATCTCGGAATTAGCGAACTCTTCTCTGAGATCAACTCGAAC 466
Query 396 CCAGGACT-TGTAGATGAACAAGGAAGATT-AATAGTCTCTCCTTACCATGACTTCACCA 453
|||||| | ||| ||||||| || | ||| || | ||||||| ||||| |||||||| |
Sbjct 467 CCAGGA-TATGTCGATGAACGTGGCACATTGAA-AATCTCTCCCTACCACGACTTCACTA 524
Query 454 AATCTTCTCATGGTTGCTC---T--C-GTTGCCCTCCTAACATGTGCAAGGGTTTGATAA 507
|||| ||||| | ||||| | | |||||||||||||||||||||||||||||| |
Sbjct 525 AATCCCCTCATAGCTGCTCTTGTGGCACTTGCCCTCCTAACATGTGCAAGGGTTTGATCA 584
Query 508 TCGAAAGGATTCAAGCT-TCTCTGACC-AAAGAAGGGAGGAAGACCAATATGATATATCT 565
| || ||||||||| | ||| | | | |||||||||| ||||| || ||||| |||||
Sbjct 585 TTGAGAGGATTCAA-CAATCTTT-AGCTAAAGAAGGGAAGAAGA--AA-ATGATCTATCT 639
Query 566 TGGAGATGGTGCTGGTGATTACTGTCCAAGTCTTGGA-CTCAA-AGCTGAAGATTACATG 623
|||||||| ||||| ||||||||||||||| ||| | || || | ||||||||||| ||
Sbjct 640 AGGAGATGGAGCTGGCGATTACTGTCCAAGT-TTGAAACTAAACA-CTGAAGATTACGTG 697
Query 624 ATGCCAAGGAAGAATTTCCCGGTTTGGGATTTGATTAGTCAAAATCCCATGTTGGTTAAG 683
|||||| | ||||||||||| || |||||| | |||||||||||||| ||| || ||||
Sbjct 698 ATGCCACGTAAGAATTTCCCTGTATGGGATCTAATTAGTCAAAATCCAATGCTGATTAAA 757
Query 684 GCTACCG-TTAGAGATTGGACCGATGGAGAA-GATATGGAGAGGATACTAAT-GGAA 737
|| | || ||||||| ||||||||||| || | ||||||| |||| | || ||||
Sbjct 758 GC-AGCGATTAGAGAATGGACCGATGGCCAAAGC-ATGGAGATGATATTGATAGGAA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5