BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920696
Length=653
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sorti... 1014 0.0
> AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sorting
46.1 | chr1:6099089-6100315 FORWARD LENGTH=895
Length=895
Score = 1014 bits (549), Expect = 0.0
Identities = 622/656 (95%), Gaps = 9/656 (1%)
Strand=Plus/Plus
Query 3 CCGATTAGAACTGATC---GAGATGGGTAATACAGATAAGCTGATGAACCAAATCTTTGA 59
|||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 102 CCGATT--AACTGATCGAGGAGATGGGTAATACAGATAAGCTGATGAACCAGATCTTTGA 159
Query 60 TTTGAAATTCACGTCAAAGTCTCTGCAGAGGCAAGCTAGGAAGTGCGAAAGAGAGGAGAA 119
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 160 ATTGAAATTTACGTCAAAGTCTCTGCAGAGGCAAGCTAGGAAGTGCGAAAAAGAGGAG-A 218
Query 120 G-TCGGAGAAGCTCAAGGTCAAGAAAGCCATTGAGAAAGGGAACATGGATGGTGCTCGGA 178
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 219 GATCGGAGAAGCTCAAGGTAAAGAAAGCCATTGAGAAAGGTAACATGGATGGTGCTCGGA 278
Query 179 TCTATGCCGAGAACGCCATTCGCAAACGCAGTGAGCAGATGAACTACCTTCGTCTCTCTT 238
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 279 TCTATGCCGAGAACGCCATTCGCAAACGCAGCGAGCAGATGAACTACCTTCGTCTCTCTT 338
Query 239 CTCGATTGGACGCTGTTGTAGCTCGGCTCGATACCCAGGCTAAGATGGCTACCATCACCA 298
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 339 CTCGATTGGACGCTGTTGTTGCTCGACTCGATACCCAGGCTAAGATGGCTACCATCACCA 398
Query 299 AATCGATGACTAACATCGTCAAATCCCTCGAATCGACTCTTGCCACTGGTAACTTACAGA 358
|||||||||| ||||| |||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 399 AATCGATGACCAACATTGTCAAATCCCTCGAATCGTCTCTTACCACTGGCAACTTACAGA 458
Query 359 AGATGTCAGAGACTATGGATTCGTTTGAGAAACAGTTTGTGAACATGGAAGTCCAAGCTG 418
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 AGATGTCTGAGACGATGGATTCGTTTGAGAAACAGTTTGTGAACATGGAAGTCCAAGCTG 518
Query 419 AGTTCATGGAGAATGCAATGGCTGGTTCCT-CTTCATTGTCGACTCCAGAAGGAGAAGTC 477
|||||||||| |||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 519 AGTTCATGGATAATGCAATGGCTGGCT-CTACTTCATTGTCGACTCCAGAAGGAGAAGTC 577
Query 478 AACAGCTTGATGCAGCAAGTAGCAGATGATTACGGTCTTGAAGTTTCTGTTGGACTGCCT 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 578 AACAGCTTGATGCAGCAAGTAGCAGATGATTACGGTCTTGAAGTTTCTGTTGGACTACCT 637
Query 538 CAGCCTGCTGCTCATGCCATTCCTACCAAGACTGAAGAGAAAGTTGAGGAGGATGATTTA 597
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 CAGCCTGCTGGTCATGCCATTCCTACCAAGACTGAAGAGAAAGTTGAGGAGGATGATTTA 697
Query 598 TCTAGGAGACTTGCCGAGCTTAAAGCCAGAGGATAATTAACTAACCTAGCAAAAAA 653
| ||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct 698 ACCAGGAGACTTGCCGAGCTTAAAGCCAGAGGTTAATTAGCTAACCTAACAAAAAA 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31547044316
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5