BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920704
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17810.1 | Symbols: BETA-TIP | beta-tonoplast intrinsic prot... 1363 0.0
> AT1G17810.1 | Symbols: BETA-TIP | beta-tonoplast intrinsic protein
| chr1:6130025-6131627 FORWARD LENGTH=1173
Length=1173
Score = 1363 bits (738), Expect = 0.0
Identities = 804/837 (96%), Gaps = 0/837 (0%)
Strand=Plus/Plus
Query 1 CTCTCACTTAAATTAGGTTTATAAATGGCTACATCTACTAGAAGAGCATATGGATTCGGA 60
||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct 161 CTCTCACTTAAATTAGGGTTATATATGGCTACATCTGCTAGAAGAGCATATGGATTCGGG 220
Query 61 AGAGCTGACGAGGCGACTCACCCGGACTCCATTCGAGCCACTTTGGCTGAGTTTCTTTCC 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 221 AGAGCTGACGAGGCGACTCACCCGGACTCCATTAGAGCCACTTTGGCTGAGTTTCTTTCC 280
Query 121 ACGTTCGTCTTCGTCTTTGCTGGAGAAGGCTCAATCCTCGCTCTAGACAAGTTGTATTGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 ACGTTCGTCTTCGTCTTTGCTGGAGAAGGCTCAATCCTCGCTCTAGACAAGTTGTATTGG 340
Query 181 GACACGGCGGCTCACACGGGGACAAACACGCCGGGAGGGTTAGTTCTGGTGGCGTTAGCT 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 341 GACACGGCGGCTCACACGGGGACAAACACGCCTGGAGGGTTAGTTCTGGTGGCGTTAGCT 400
Query 241 CATGCATTGGCCTTGTTTGCGGCTGTTTCGGCGGCCATCAATGTCTCTGGTGGCCACGTG 300
||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 401 CATGCATTGGCCTTGTTCGCGGCTGTTTCTGCAGCCATCAATGTCTCTGGTGGCCACGTC 460
Query 301 AACCCTGCTGTCACTTTTGCTGCTCTAATCGGAGGCAGGATCTCGGTGATCCGAGCTATC 360
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 461 AACCCCGCTGTCACTTTTGCTGCTCTAATCGGAGGCAGGATCTCGGTCATTCGAGCTATC 520
Query 361 TACTATTGGATTGCTCAGCTTCTTGGTGCCATCATCGCTTGTCTCTTGTTGAGGCTTGCT 420
||||||||| ||||||||||| | ||||| ||| |||||||||||||||||||||||||
Sbjct 521 TACTATTGGGTTGCTCAGCTTATAGGTGCTATCCTCGCTTGTCTCTTGTTGAGGCTTGCC 580
Query 421 ACCAATGGCTTGAGACCAATAGGTTTCCATGTAGCATCAGGAGTTAGTGAGCTTCATGGG 480
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 581 ACTAATGGCTTGAGACCAGTAGGTTTCCATGTAGCATCAGGAGTTAGTGAGCTTCATGGG 640
Query 481 CTAGTGATGGAGATCATACTTACATTTGCTTTGGTTTATGTTGTCTACTCGACCGCAATC 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CTACTGATGGAGATCATACTTACATTTGCTTTGGTTTATGTTGTCTACTCGACCGCAATC 700
Query 541 GATCCAAAGAGAGGGAGTATTGGGATCATAGCGCCGCTAGCCATCGGGCTCATAGTTGGG 600
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 701 GATCCAAAGAGGGGGAGTATTGGGATCATAGCGCCACTAGCCATCGGGCTCATAGTTGGG 760
Query 601 GCAAACACTTTGGTGGGAGGACCCTTCGATGGGGCCTCTATGAATCCGGCTAGAGCCTTT 660
||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 761 GCAAACATTTTGGTGGGAGGACCTTTCGATGGAGCCTCTATGAATCCGGCTAGAGCCTTT 820
Query 661 GGTCCAGCACTAGTGGGATGGAGATGGAATAACCATTGGATCTATTGGGTTGGACCGTTC 720
||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 821 GGTCCAGCATTAGTGGGATGGAGGTGGAGTAACCATTGGATCTATTGGGTTGGACCGTTC 880
Query 721 ATTGGTGGTGCACTCGCCGCTCTTATCTATGAGTACATGATCATCCCCAGCGTGAACGAA 780
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 881 ATTGGTGGTGCACTCGCCGCACTGATCTATGAGTACATGATCATCCCCAGCGTGAACGAA 940
Query 781 CCTCCTCACCACAGTACCCACCAACCATTGGCTCCGGAAGATTACTAGGCCGGAGCA 837
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 941 CCTCCTCACCACAGTACCCACCAACCATTGGCTCCGGAAGATTACTAGACCGGAGCA 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5