BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920705
Length=2435
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17820.1 | Symbols: | Putative integral membrane protein co... 3825 0.0
AT1G73200.1 | Symbols: | Putative integral membrane protein co... 119 1e-25
> AT1G17820.1 | Symbols: | Putative integral membrane protein
conserved region (DUF2404) | chr1:6131537-6135345 REVERSE LENGTH=2856
Length=2856
Score = 3825 bits (2071), Expect = 0.0
Identities = 2331/2454 (95%), Gaps = 28/2454 (1%)
Strand=Plus/Plus
Query 5 TCACAGCTTCCCGGAGATGTTTTCGTTTGTGGGTTTCGTGGTGTTCTTATCTGGATTTTT 64
||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 215 TCAGAGCTTCCGGGAGATGTTTTCGTTTGTGGGTTTCGTGGTGTTCCTCTCTGGATTTTT 274
Query 65 CCTGGGAATTCTCGCCGTCTTGGCCGCTGAAGCAGCAGGG-TTGATGTATCTCTTGAAGC 123
||||||||||||||||||||| |||||||||| || ||| || ||||||||| ||||||
Sbjct 275 CCTGGGAATTCTCGCCGTCTTATCCGCTGAAGCTGC-GGGATTTATGTATCTCCTGAAGC 333
Query 124 GATTTAATCGGAAGAGAGATCGGATTGAGTCAAAACCCGTCTCTGATCCATCTACCAAGG 183
|||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 334 GATTGAATCGCAAGAGAGATCGTATTGAGTCAAAACCCGTCTCTGATCCATCTATCAAGG 393
Query 184 ATTTTGATCCTCGCGAATCCATCGATTTCGGTATCAACAAACAGGGAGTGGTATGGATTT 243
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 394 ATTTTAATCCTCGCGAATCCATCGATTTCTGTATCAACAAACAGGGAGTGGTATGGATTT 453
Query 244 TGGAGTTGGATGAAGGTATAAAGAACTGGATGAAGGAAAAGTTACCAAAAGAGCAGAAGA 303
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TGGAATTGGATGAAGGTCTGAAGAACTGGATGAAGGAAAAGTTACCAAAAGAGCAGAAGA 513
Query 304 GGAAGAGACACTTGTTGGAGATTCATCCACTTCGAAAGTTCGCTCGAATCAAAGATCACA 363
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GGAAGAGAGGCTTATTGGAGATTCATCCACTTCGAAAGTTCGCTCGAATCAAAGATCACA 573
Query 364 AGCTCATCTTGTCAGATGCTGATGGCACTCAGGGTCAGACTACAGTTTCTTTAAAAGGTT 423
|||| |||||||||||||||||| |||||||| || ||||||| |||||||||| |||||
Sbjct 574 AGCTTATCTTGTCAGATGCTGATAGCACTCAGAGTGAGACTACCGTTTCTTTAATAGGTT 633
Query 424 GCAGTATTGAGGCTGTTTCAGGATCTGATCTCCCTACAAGAAAATGGGCCAAAAGATTTC 483
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 634 GCAGTATTGAGGCTGTTTCAGGCTCTGATCTCCCTACAAGAAAATGGGCCAAAAGGTTTC 693
Query 484 CTATAAAAGTTGAAGGCAAGATTTATCCAGCCTTATACAAGGGAAACCAAGTGTTTTACA 543
| |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 694 CAATAAAAGTTGAAAGCAAGATTTCTCCAGCCTTATACAAGGGAAACCAGGTGTTTTACA 753
Query 544 TCTATCTCGAGACTTCTTGGGAAAAAGAATCATGGTGTAAAGCCCTTCGTCTTGCTGCTT 603
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 754 TCTATCTGGAGACTTCTTGGGAAAAGGAATCATGGTGTAAAGCCCTTCGTCTTGCTTCTT 813
Query 604 GCGAAAATCAGGAAAGGTTTATTTGGTACTCCACCAAATTGAAAGAAGATTTCCGTAATT 663
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GTGAAAATCAGGAAAGGTTTATTTGGTACTCCACCAAATTGAAAGAAGATTTCCGTAATT 873
Query 664 ATGTGACTTCTCTTAATGTTGCATATCCTTCATTTATGAAACCATCTCTTGGGTTTAGTT 723
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 874 ATGTGACTTCTCTTAATGTTGCATATCCTTCATTTATGAAACCATCACTTGGCTTTAGTT 933
Query 724 TTGAGACACTTGACAAAGGGAACAGAACGGATGGTTCATCCTCAAAGGTTCGCTTGTTCT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TTGAGACACTTGACAAAGGGAACAGAACGGATGGTTCATCCTCAAAGGTTCGCTTGTTCT 993
Query 784 TGAAGAAATTTTCTAGAAAGCGATCAAATCGTGAAGACAGGAAAACCTATTCACAACATG 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 994 TGAAGAAATTTTCTAGAAAGCGATCAAATCGTGAAGACAGGAAAACCTATTCACATCATG 1053
Query 844 GAAGTAGCTCAGGGAAGTGCTTTCCAGGAAAGAATAATATTACAGATGATACTGATGTGC 903
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1054 GAAGTAGCTCAGGGAAGTGCTTTCCAGGAAAGAATAATATGACAGATGATACTGATGTGC 1113
Query 904 CTATTTTTTCACGTTCTGT--G----AGC---CATA--------GT-AGTCATGTTTCTG 945
||||||||||||||||||| | ||| |||| || |||||| ||||||
Sbjct 1114 CTATTTTTTCACGTTCTGTGAGCCATAGCAGTCATATTTCTGGGGTCAGTCATCTTTCTG 1173
Query 946 GGGTTTCAGATGGAGATTCTGAAGACAAGGTTGACATGGATGAAGGAACATTAGCGTTGA 1005
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1174 GGGTTTCAGATGGAGACTCTGAAGAAAAGGTTGACATGGATGAAGGAACATTAGCGTTGA 1233
Query 1006 ACTTGCTCATTTCGAGGCTATTTTTCGATCTCAAACGGAAGACAGGAGTGAAGAATTCAG 1065
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1234 ACTTGCTCATTTCTAGGCTATTTTTCGATCTCAAACGGAAAACAGGAGTGAAGAATTCAG 1293
Query 1066 TGCAAGCACGAATCCAGCGGTTGTTATCTAACATGAGGACTCCGAGCTACATTGGCGAAC 1125
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1294 TGCAAGCACGAATTCAGCGGTTGTTATCTAACATGAGGACTCCGAGCTACATAGGCGAAC 1353
Query 1126 TAATCTGCTCCGATGTTGACACTGGAAATCTCCCACCTCATATACATGCTACACGGGTTC 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 TAATCTGCTCCGATGTTGACACTGGAAATCTCCCACCTCATATACATGCTACACGGGTTC 1413
Query 1186 TTCCGATGGAGATGAGTGGTGTGTGGGCATTCGAACTAGATATTGAATACTCTGGTGACG 1245
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 TTCCAATGGAGATGAGTGGTGTGTGGGCATTCGAACTAGATATTGAATACTCTGGTGACG 1473
Query 1246 TGGTAATTGACGTTGAAACACGGGTTGACATCCGTGAGGTGGATCTGCAA-AATGGCATA 1304
|||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1474 TGGTGATTGACGTTGAAACACGGGTTGACATCCGTGAGGTGGATCTGCAACAA-GGCATA 1532
Query 1305 ACCGATACAAGGTTGCAGCCAAGTTCTTCAGGGGAAGTCCCATCAAATTTCGCTGAAGTT 1364
||||||||||||||||||||||| |||||||||| |||||| |||||||| ||||||| |
Sbjct 1533 ACCGATACAAGGTTGCAGCCAAGGTCTTCAGGGGTAGTCCCGTCAAATTTTGCTGAAGGT 1592
Query 1365 GTTGAAGATTTTGAAAAGCAATTAGTCATCCCTGTGGAAACTGTTGATGCAGGAGAAGTG 1424
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1593 GTTGAAGATTTTGAAAAGCAATTAGTCTTCCCTGTGGAAACTGTTAATGCAGGAGAAGTG 1652
Query 1425 AAAAATGGTGGAGCCAATAAAGGAGATGAATCCAAGAGCTCAAAAGGTACGAAGGCAGCT 1484
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1653 AAAAATGGTGGAGCCAATAAAGCAGATGAATCCAAGAGCTCAAGAGGTACGAAGGCAGCT 1712
Query 1485 CCAAATGGTGTATCCAGGTGGAAGTCTATTCTTAAAACAATTGCAGAACAAGTTTCCCAG 1544
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1713 CCAAATGGTGTATCCAGGTGGAAGTCTATTCTTAAAACAATTGCTGAACAAGTTTCTCAG 1772
Query 1545 GTGCCTATCTCTTTGTCAATAAGGGTGTCTTCTCTTCGAGGGACACTGCGGGTACACATG 1604
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1773 GTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTCGAGGGACACTGCGGGTACACATG 1832
Query 1605 AAGCCGCCTCCTTCTGATCAATTATGGTTTGGGTTCACGAGCATGCCAGATATAGCATTC 1664
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||
Sbjct 1833 AAGCCGCCTCCTTCTGATCAATTATGGTTTGGATTCACGAGCATGCCGGATATCGAATTC 1892
Query 1665 GATCTCGCATCTTCTGTTGGGGAGCACAAAATCACCAACAGCCATGTTGCAATGTTCTTG 1724
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1893 GATCTCGCATCTTCTGTTGGGGAACACAAAATCACCAACAGCCATGTTGCAATGTTCTTG 1952
Query 1725 ATCAACCGGTTTAAAACGGCAATACGAGAAGCGGTGGTTCTTCCCAACTGTGAAAGCCTA 1784
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 ATCAACCGGTTTAAGACGGCAATACGAGAAGCGGTGGTTCTTCCCAACTGTGAAAGCCTA 2012
Query 1785 ACGATTCCTTGGATGATTGCTGAAAAAGATGATTGGGTCCAACGCAAAGCCGCTCCATTC 1844
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2013 ACGATTCCTTGGATGATTGCTGAAAAAGATGATTGGGTTCAACGCAAAGCCGCTCCATTC 2072
Query 1845 ATGTGGCTAAATCAAGAAAACGACCACAATAGCTCCCATGCAACAGAAGCGAGATCTAAA 1904
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 2073 ATGTGGCTGAATCAAGAAAACGATCACAATACCTCCCATGCAACAGAAGCGAGATCTAAA 2132
Query 1905 TCTGACAAGCCACCTACTTGGTCCTCATGTGTTCAGGCTGAGCAAATGCAGAGAACTGCA 1964
|||||||||||||| |||| || ||||||| |||| ||||||||||||||||||||||||
Sbjct 2133 TCTGACAAGCCACCGACTTCGTTCTCATGTCTTCAAGCTGAGCAAATGCAGAGAACTGCA 2192
Query 1965 AACGCCACCCAGAAGATTATTTCTGAAATAGGGACACTGGCTTCTTCCTCCTGTGCTCAG 2024
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2193 AACGCCACCCAGAAGATTATTTCTGAAATAGGGACATTGGCTTCTTCCTCCTGTGCTCAG 2252
Query 2025 TCTGAGCAAATGCAGAAAGCGGCCACTGCTTTCCAGAAACCGAACACTGAAGCAGAGGCT 2084
||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 2253 TCTGAGCAAGTGCAGAAAGCGGCCACTGCTTTCCAGAAACAGAATACTGAAGCAGAAGCT 2312
Query 2085 ATTATGTCAACGCCATTGTCAAA-TACCACAACTGTAACAATAGAGAGTGATAAATCCTT 2143
|||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 2313 ATTATGTCTACGCCATTGTCAAACT-CCACAACTGTAACAATAGAGAATGATAAATCCTT 2371
Query 2144 GGAAGAACTGAAAACTCCACTACTGCTACCCAGCAGCAGTGAA-AAGCAGGAGACGAACT 2202
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 2372 GGAAGAACTGAAAACTCCACTACTGGTACCCAGCAGCAGT-AACAAGCAGGAGACGAACT 2430
Query 2203 CAAGAGGGAGTAGCAGAGAGGTTTCTGCTGTTCAATCACCATCTAGGTCTGTATTTTCAA 2262
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 2431 CAAGAGGGAGTAGCAGAGAGGTTTCTGCTGTTCAGTCACCATCTAGGTCTGTAGCTTCAA 2490
Query 2263 GCGAAGAAGATGATTCAAGGGG-AAAGAAACAGGGAAGACGAGCAAGGATGTTAGATCTT 2321
|||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| ||||||
Sbjct 2491 GCGAAGAAGATGATTCAAGGGGGAAA-AAACAGGGAAGAAGAGCAAGAATGTTGGATCTT 2549
Query 2322 GGGaaaaaaaTGGGGGAGAAGTTGGAGGAGAAGAGGCGTCACATGGAGGAAAAGAGTAGA 2381
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2550 GGGAAGAAAATGGGGGAGAAATTGGAGGAGAAGAGGCGTCACATGGAGGAGAAGAGTAGA 2609
Query 2382 CAGATTGTTGAAAAGATGAGAGGACCTTCCTAACATGAGAAGGAAGAAGCTTTT 2435
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2610 CAGATTGTTGAAAAGATGAGAGGACCTTCTTAACATGAGAAGGAAGAAGCTTTT 2663
> AT1G73200.1 | Symbols: | Putative integral membrane protein
conserved region (DUF2404) | chr1:27523454-27526718 REVERSE
LENGTH=2485
Length=2485
Score = 119 bits (64), Expect = 1e-25
Identities = 90/103 (87%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2307 AGGATGTTAGATCTTGGGaaaaaaaTGGGGGAGAAGTTGGAGGAGAAGAGGCGTCACATG 2366
|||||||| ||| || |||| ||| |||| |||||||| || ||||||| |||||| |
Sbjct 2381 AGGATGTTCGATTTTAGGAAGAAAGTGGGAGAGAAGTTTGAAGAGAAGAAACGTCACGTT 2440
Query 2367 GAGGAAAAGAGTAGACAGATTGTTGAAAAGATGAGAGGACCTT 2409
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2441 GAGGAAAAAAGTAGACAGATTGTTGAAAAGATGAGAGGACCTT 2483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120933112905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5