BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920705 Length=2435 Score E Sequences producing significant alignments: (Bits) Value AT1G17820.1 | Symbols: | Putative integral membrane protein co... 3825 0.0 AT1G73200.1 | Symbols: | Putative integral membrane protein co... 119 1e-25 > AT1G17820.1 | Symbols: | Putative integral membrane protein conserved region (DUF2404) | chr1:6131537-6135345 REVERSE LENGTH=2856 Length=2856 Score = 3825 bits (2071), Expect = 0.0 Identities = 2331/2454 (95%), Gaps = 28/2454 (1%) Strand=Plus/Plus Query 5 TCACAGCTTCCCGGAGATGTTTTCGTTTGTGGGTTTCGTGGTGTTCTTATCTGGATTTTT 64 ||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 215 TCAGAGCTTCCGGGAGATGTTTTCGTTTGTGGGTTTCGTGGTGTTCCTCTCTGGATTTTT 274 Query 65 CCTGGGAATTCTCGCCGTCTTGGCCGCTGAAGCAGCAGGG-TTGATGTATCTCTTGAAGC 123 ||||||||||||||||||||| |||||||||| || ||| || ||||||||| |||||| Sbjct 275 CCTGGGAATTCTCGCCGTCTTATCCGCTGAAGCTGC-GGGATTTATGTATCTCCTGAAGC 333 Query 124 GATTTAATCGGAAGAGAGATCGGATTGAGTCAAAACCCGTCTCTGATCCATCTACCAAGG 183 |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 334 GATTGAATCGCAAGAGAGATCGTATTGAGTCAAAACCCGTCTCTGATCCATCTATCAAGG 393 Query 184 ATTTTGATCCTCGCGAATCCATCGATTTCGGTATCAACAAACAGGGAGTGGTATGGATTT 243 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 394 ATTTTAATCCTCGCGAATCCATCGATTTCTGTATCAACAAACAGGGAGTGGTATGGATTT 453 Query 244 TGGAGTTGGATGAAGGTATAAAGAACTGGATGAAGGAAAAGTTACCAAAAGAGCAGAAGA 303 |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 454 TGGAATTGGATGAAGGTCTGAAGAACTGGATGAAGGAAAAGTTACCAAAAGAGCAGAAGA 513 Query 304 GGAAGAGACACTTGTTGGAGATTCATCCACTTCGAAAGTTCGCTCGAATCAAAGATCACA 363 |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 514 GGAAGAGAGGCTTATTGGAGATTCATCCACTTCGAAAGTTCGCTCGAATCAAAGATCACA 573 Query 364 AGCTCATCTTGTCAGATGCTGATGGCACTCAGGGTCAGACTACAGTTTCTTTAAAAGGTT 423 |||| |||||||||||||||||| |||||||| || ||||||| |||||||||| ||||| Sbjct 574 AGCTTATCTTGTCAGATGCTGATAGCACTCAGAGTGAGACTACCGTTTCTTTAATAGGTT 633 Query 424 GCAGTATTGAGGCTGTTTCAGGATCTGATCTCCCTACAAGAAAATGGGCCAAAAGATTTC 483 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 634 GCAGTATTGAGGCTGTTTCAGGCTCTGATCTCCCTACAAGAAAATGGGCCAAAAGGTTTC 693 Query 484 CTATAAAAGTTGAAGGCAAGATTTATCCAGCCTTATACAAGGGAAACCAAGTGTTTTACA 543 | |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 694 CAATAAAAGTTGAAAGCAAGATTTCTCCAGCCTTATACAAGGGAAACCAGGTGTTTTACA 753 Query 544 TCTATCTCGAGACTTCTTGGGAAAAAGAATCATGGTGTAAAGCCCTTCGTCTTGCTGCTT 603 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 754 TCTATCTGGAGACTTCTTGGGAAAAGGAATCATGGTGTAAAGCCCTTCGTCTTGCTTCTT 813 Query 604 GCGAAAATCAGGAAAGGTTTATTTGGTACTCCACCAAATTGAAAGAAGATTTCCGTAATT 663 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 814 GTGAAAATCAGGAAAGGTTTATTTGGTACTCCACCAAATTGAAAGAAGATTTCCGTAATT 873 Query 664 ATGTGACTTCTCTTAATGTTGCATATCCTTCATTTATGAAACCATCTCTTGGGTTTAGTT 723 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 874 ATGTGACTTCTCTTAATGTTGCATATCCTTCATTTATGAAACCATCACTTGGCTTTAGTT 933 Query 724 TTGAGACACTTGACAAAGGGAACAGAACGGATGGTTCATCCTCAAAGGTTCGCTTGTTCT 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 934 TTGAGACACTTGACAAAGGGAACAGAACGGATGGTTCATCCTCAAAGGTTCGCTTGTTCT 993 Query 784 TGAAGAAATTTTCTAGAAAGCGATCAAATCGTGAAGACAGGAAAACCTATTCACAACATG 843 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 994 TGAAGAAATTTTCTAGAAAGCGATCAAATCGTGAAGACAGGAAAACCTATTCACATCATG 1053 Query 844 GAAGTAGCTCAGGGAAGTGCTTTCCAGGAAAGAATAATATTACAGATGATACTGATGTGC 903 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1054 GAAGTAGCTCAGGGAAGTGCTTTCCAGGAAAGAATAATATGACAGATGATACTGATGTGC 1113 Query 904 CTATTTTTTCACGTTCTGT--G----AGC---CATA--------GT-AGTCATGTTTCTG 945 ||||||||||||||||||| | ||| |||| || |||||| |||||| Sbjct 1114 CTATTTTTTCACGTTCTGTGAGCCATAGCAGTCATATTTCTGGGGTCAGTCATCTTTCTG 1173 Query 946 GGGTTTCAGATGGAGATTCTGAAGACAAGGTTGACATGGATGAAGGAACATTAGCGTTGA 1005 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1174 GGGTTTCAGATGGAGACTCTGAAGAAAAGGTTGACATGGATGAAGGAACATTAGCGTTGA 1233 Query 1006 ACTTGCTCATTTCGAGGCTATTTTTCGATCTCAAACGGAAGACAGGAGTGAAGAATTCAG 1065 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1234 ACTTGCTCATTTCTAGGCTATTTTTCGATCTCAAACGGAAAACAGGAGTGAAGAATTCAG 1293 Query 1066 TGCAAGCACGAATCCAGCGGTTGTTATCTAACATGAGGACTCCGAGCTACATTGGCGAAC 1125 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1294 TGCAAGCACGAATTCAGCGGTTGTTATCTAACATGAGGACTCCGAGCTACATAGGCGAAC 1353 Query 1126 TAATCTGCTCCGATGTTGACACTGGAAATCTCCCACCTCATATACATGCTACACGGGTTC 1185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1354 TAATCTGCTCCGATGTTGACACTGGAAATCTCCCACCTCATATACATGCTACACGGGTTC 1413 Query 1186 TTCCGATGGAGATGAGTGGTGTGTGGGCATTCGAACTAGATATTGAATACTCTGGTGACG 1245 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1414 TTCCAATGGAGATGAGTGGTGTGTGGGCATTCGAACTAGATATTGAATACTCTGGTGACG 1473 Query 1246 TGGTAATTGACGTTGAAACACGGGTTGACATCCGTGAGGTGGATCTGCAA-AATGGCATA 1304 |||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1474 TGGTGATTGACGTTGAAACACGGGTTGACATCCGTGAGGTGGATCTGCAACAA-GGCATA 1532 Query 1305 ACCGATACAAGGTTGCAGCCAAGTTCTTCAGGGGAAGTCCCATCAAATTTCGCTGAAGTT 1364 ||||||||||||||||||||||| |||||||||| |||||| |||||||| ||||||| | Sbjct 1533 ACCGATACAAGGTTGCAGCCAAGGTCTTCAGGGGTAGTCCCGTCAAATTTTGCTGAAGGT 1592 Query 1365 GTTGAAGATTTTGAAAAGCAATTAGTCATCCCTGTGGAAACTGTTGATGCAGGAGAAGTG 1424 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1593 GTTGAAGATTTTGAAAAGCAATTAGTCTTCCCTGTGGAAACTGTTAATGCAGGAGAAGTG 1652 Query 1425 AAAAATGGTGGAGCCAATAAAGGAGATGAATCCAAGAGCTCAAAAGGTACGAAGGCAGCT 1484 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1653 AAAAATGGTGGAGCCAATAAAGCAGATGAATCCAAGAGCTCAAGAGGTACGAAGGCAGCT 1712 Query 1485 CCAAATGGTGTATCCAGGTGGAAGTCTATTCTTAAAACAATTGCAGAACAAGTTTCCCAG 1544 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1713 CCAAATGGTGTATCCAGGTGGAAGTCTATTCTTAAAACAATTGCTGAACAAGTTTCTCAG 1772 Query 1545 GTGCCTATCTCTTTGTCAATAAGGGTGTCTTCTCTTCGAGGGACACTGCGGGTACACATG 1604 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1773 GTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTCGAGGGACACTGCGGGTACACATG 1832 Query 1605 AAGCCGCCTCCTTCTGATCAATTATGGTTTGGGTTCACGAGCATGCCAGATATAGCATTC 1664 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||| Sbjct 1833 AAGCCGCCTCCTTCTGATCAATTATGGTTTGGATTCACGAGCATGCCGGATATCGAATTC 1892 Query 1665 GATCTCGCATCTTCTGTTGGGGAGCACAAAATCACCAACAGCCATGTTGCAATGTTCTTG 1724 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1893 GATCTCGCATCTTCTGTTGGGGAACACAAAATCACCAACAGCCATGTTGCAATGTTCTTG 1952 Query 1725 ATCAACCGGTTTAAAACGGCAATACGAGAAGCGGTGGTTCTTCCCAACTGTGAAAGCCTA 1784 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1953 ATCAACCGGTTTAAGACGGCAATACGAGAAGCGGTGGTTCTTCCCAACTGTGAAAGCCTA 2012 Query 1785 ACGATTCCTTGGATGATTGCTGAAAAAGATGATTGGGTCCAACGCAAAGCCGCTCCATTC 1844 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2013 ACGATTCCTTGGATGATTGCTGAAAAAGATGATTGGGTTCAACGCAAAGCCGCTCCATTC 2072 Query 1845 ATGTGGCTAAATCAAGAAAACGACCACAATAGCTCCCATGCAACAGAAGCGAGATCTAAA 1904 |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 2073 ATGTGGCTGAATCAAGAAAACGATCACAATACCTCCCATGCAACAGAAGCGAGATCTAAA 2132 Query 1905 TCTGACAAGCCACCTACTTGGTCCTCATGTGTTCAGGCTGAGCAAATGCAGAGAACTGCA 1964 |||||||||||||| |||| || ||||||| |||| |||||||||||||||||||||||| Sbjct 2133 TCTGACAAGCCACCGACTTCGTTCTCATGTCTTCAAGCTGAGCAAATGCAGAGAACTGCA 2192 Query 1965 AACGCCACCCAGAAGATTATTTCTGAAATAGGGACACTGGCTTCTTCCTCCTGTGCTCAG 2024 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2193 AACGCCACCCAGAAGATTATTTCTGAAATAGGGACATTGGCTTCTTCCTCCTGTGCTCAG 2252 Query 2025 TCTGAGCAAATGCAGAAAGCGGCCACTGCTTTCCAGAAACCGAACACTGAAGCAGAGGCT 2084 ||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| ||| Sbjct 2253 TCTGAGCAAGTGCAGAAAGCGGCCACTGCTTTCCAGAAACAGAATACTGAAGCAGAAGCT 2312 Query 2085 ATTATGTCAACGCCATTGTCAAA-TACCACAACTGTAACAATAGAGAGTGATAAATCCTT 2143 |||||||| |||||||||||||| | ||||||||||||||||||||| |||||||||||| Sbjct 2313 ATTATGTCTACGCCATTGTCAAACT-CCACAACTGTAACAATAGAGAATGATAAATCCTT 2371 Query 2144 GGAAGAACTGAAAACTCCACTACTGCTACCCAGCAGCAGTGAA-AAGCAGGAGACGAACT 2202 ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 2372 GGAAGAACTGAAAACTCCACTACTGGTACCCAGCAGCAGT-AACAAGCAGGAGACGAACT 2430 Query 2203 CAAGAGGGAGTAGCAGAGAGGTTTCTGCTGTTCAATCACCATCTAGGTCTGTATTTTCAA 2262 |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 2431 CAAGAGGGAGTAGCAGAGAGGTTTCTGCTGTTCAGTCACCATCTAGGTCTGTAGCTTCAA 2490 Query 2263 GCGAAGAAGATGATTCAAGGGG-AAAGAAACAGGGAAGACGAGCAAGGATGTTAGATCTT 2321 |||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| |||||| Sbjct 2491 GCGAAGAAGATGATTCAAGGGGGAAA-AAACAGGGAAGAAGAGCAAGAATGTTGGATCTT 2549 Query 2322 GGGaaaaaaaTGGGGGAGAAGTTGGAGGAGAAGAGGCGTCACATGGAGGAAAAGAGTAGA 2381 ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 2550 GGGAAGAAAATGGGGGAGAAATTGGAGGAGAAGAGGCGTCACATGGAGGAGAAGAGTAGA 2609 Query 2382 CAGATTGTTGAAAAGATGAGAGGACCTTCCTAACATGAGAAGGAAGAAGCTTTT 2435 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2610 CAGATTGTTGAAAAGATGAGAGGACCTTCTTAACATGAGAAGGAAGAAGCTTTT 2663 > AT1G73200.1 | Symbols: | Putative integral membrane protein conserved region (DUF2404) | chr1:27523454-27526718 REVERSE LENGTH=2485 Length=2485 Score = 119 bits (64), Expect = 1e-25 Identities = 90/103 (87%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2307 AGGATGTTAGATCTTGGGaaaaaaaTGGGGGAGAAGTTGGAGGAGAAGAGGCGTCACATG 2366 |||||||| ||| || |||| ||| |||| |||||||| || ||||||| |||||| | Sbjct 2381 AGGATGTTCGATTTTAGGAAGAAAGTGGGAGAGAAGTTTGAAGAGAAGAAACGTCACGTT 2440 Query 2367 GAGGAAAAGAGTAGACAGATTGTTGAAAAGATGAGAGGACCTT 2409 |||||||| |||||||||||||||||||||||||||||||||| Sbjct 2441 GAGGAAAAAAGTAGACAGATTGTTGAAAAGATGAGAGGACCTT 2483 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 120933112905 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5