BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920718
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17940.1 | Symbols: | Endosomal targeting BRO1-like domain-... 2093 0.0
AT1G73390.1 | Symbols: | Endosomal targeting BRO1-like domain-... 1380 0.0
> AT1G17940.1 | Symbols: | Endosomal targeting BRO1-like domain-containing
protein | chr1:6169341-6173222 REVERSE LENGTH=1734
Length=1734
Score = 2093 bits (1133), Expect = 0.0
Identities = 1218/1260 (97%), Gaps = 2/1260 (0%)
Strand=Plus/Plus
Query 1 TTTCTTAAGCTCTGTTG-AAAATGGGATGCTTTGCATCAACACCGAAAGACTCTGGTGGG 59
||||||||| |||| || ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 217 TTTCTTAAGTTCTG-TGAAAAATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGG 275
Query 60 AATAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTGTATGTACCTGGTTTACGGATA 119
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 276 AACAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATA 335
Query 120 CCGAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCCAAGACTCTAGTGGAA 179
|| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 336 CCCAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAA 395
Query 180 CGCTTGACAGCTTTAAGAACGCGTATAGTGGTGATGGCTAACCAAGAAGGACCTACAATT 239
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 396 CGCTTGACAGCTTTAAGAACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATT 455
Query 240 ACGAGAACGAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCT 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 ACGAGAACTAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCT 515
Query 300 TTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTT 575
Query 360 AAAGTACAATTTAATTGGGTAAATCAGGAGGACGAGGAAGAGGAAACAGAGATGTCAAAC 419
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 576 AAAGTGCAATTTAATTGGGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAAC 635
Query 420 GTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 GTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCC 695
Query 480 AATTTACTGCTTCTTCCTAGAGGTTCTAGTGACGGTCACAACCATCCGAAAGTATCCGAA 539
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 696 AATTTACTGCTTCTTCCTAGAGGTTCTAGTGATGGTCACAATCATCCGAAAGTATCCGAA 755
Query 540 GAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGACTGTGCC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 756 GAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCC 815
Query 600 GTTAAGCATGTTCTCCCTCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCGGTTGACTTA 659
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 816 GTTAAGCATGTTCTCCCCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTA 875
Query 660 GCGGAAGGGGTTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAA 719
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GCAGAAGGAACTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAA 935
Query 720 CTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 CTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGT 995
Query 780 GAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTTCCGTTAGCAAAT 839
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 996 GAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAAT 1055
Query 840 GGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCG 1115
Query 900 GCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 GCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATG 1175
Query 960 GCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTTAAAGAGAGTAAGAAAGCATCTGAA 1019
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1176 GCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAA 1235
Query 1020 GCATTTAACGCCTCTTCACCTACTTCAAGGACACCGCCGCTATTTGGAACAATGAAGTAT 1079
||||| ||||||||| | ||||||||||| |||||||| || |||||||||||||| |||
Sbjct 1236 GCATTCAACGCCTCTGCGCCTACTTCAAGAACACCGCCCCTCTTTGGAACAATGAAATAT 1295
Query 1080 CTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTATAC 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1296 CTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTAC 1355
Query 1140 TCTTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAA 1199
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 TCCTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAA 1415
Query 1200 CCAGATGAGTATCAACTTCCTCTCGTCGAAGCTTAGTAGTCTGAAGATGCTCAAAGCGCT 1259
|||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 1416 CCAGATGAGTATCAACTTCCACTCGCCGAAGCTTCGTAGTCTGAAGATGCTCAAAGCGCT 1475
> AT1G73390.1 | Symbols: | Endosomal targeting BRO1-like domain-containing
protein | chr1:27590810-27594198 REVERSE LENGTH=1579
Length=1579
Score = 1380 bits (747), Expect = 0.0
Identities = 1091/1256 (87%), Gaps = 27/1256 (2%)
Strand=Plus/Plus
Query 1 TTTC-TTAAGCTCTGTTGAAAATGGGATGCTTTGCATCAACACCGAAAGACT-CTGGTGG 58
|||| ||||||| | | | ||||||||||||||||||||| ||||| || | |||||||
Sbjct 33 TTTCGTTAAGCT-T-TAG-AAATGGGATGCTTTGCATCAAGGCCGAATGA-TACTGGTGG 88
Query 59 GAATAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTGTATGTACCTGGTTTACGGAT 118
|| |||||||||||||| |||||||| || |||||||| ||||||||||||||| ||||
Sbjct 89 AAACAGAAGAAAGCCAACGAGCATCGGAGATGTTTCAGTATATGTACCTGGTTTAAGGAT 148
Query 119 ACCGAGAG-CGGTGGA-TTTTTTGCAGTCACTTGGTGATCAATTACCCAAGACTCTAGTG 176
||| | || | ||||| |||| | |||||||| ||||||||||| || ||||||||||||
Sbjct 149 ACCTA-AGCCCGTGGAGTTTTCT-CAGTCACTGGGTGATCAATTGCCAAAGACTCTAGTG 206
Query 177 GAACGCTTGACAGCTTTAAGAACGCGTATAGTGGTGATGGCTAACCAAGAAGGACCTACA 236
|| ||||||||||||||||||||| | ||||| |||||||| || ||||||||||| ||
Sbjct 207 GAGCGCTTGACAGCTTTAAGAACGAGAATAGTTGTGATGGCAAATCAAGAAGGACCAACT 266
Query 237 ATTACGAGAACGAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAA 296
|| || ||||| ||||| |||||||| ||||||||||| |||||| |||||||||||
Sbjct 267 ATAACAAGAACCAGGAGGAAGACACAGCATGGAGGTTCTACGCTCGCAGATCTCCATCAC 326
Query 297 GCTTTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAG 356
|||||| ||||||| |||| ||| |||| |||||||||||||||||||||||| ||||
Sbjct 327 GCTTTGGAAGATTATATACCGGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAA 386
Query 357 TTTAAAGTACAATTTAATTGGGTAAATCAGGAGGACGAGGAAGAGGAAACAGAGATGTCA 416
|| |||||||| |||||||||||||||||||| || || ||||||||||||| ||||||
Sbjct 387 TTCAAAGTACAGTTTAATTGGGTAAATCAGGAAGATGAAGAAGAGGAAACAGCCATGTCA 446
Query 417 AACGTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAA 476
|| |||||||||||| | || || ||||||||||||||||||||| |||||||||| |||
Sbjct 447 AATGTTTGGTATGAAATATTGTCGGTTTTGCATCTAATGGCAATGTTACAAATGTCACAA 506
Query 477 GCCAATTTACTGCTTCTTCCTAGAGGTTCTAGTGACGGTCACAACCATCCGAAAGTATCC 536
||||||||||||||||||||||||||||| ||||| || | | ||||| ||| ||||
Sbjct 507 GCCAATTTACTGCTTCTTCCTAGAGGTTCCAGTGATGG---CTATCATCCAAAAATATCA 563
Query 537 GAAGAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGACTGT 596
|||||||| || ||| |||| || |||||||||||||||||||||||||| || ||||||
Sbjct 564 GAAGAAAATAGGCGAGCTTCAATCGATATCTTCTTAAAAGCAGCTGGATACCTGGACTGT 623
Query 597 GCCGTTAAGCATGTTCTCCCTCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCGGTTGAC 656
|| || ||||||||||| ||||| ||||| | ||||| |||||||||||||| |||||
Sbjct 624 GCTGTGAAGCATGTTCTTCCTCATTTTTCAACCGAGCAGAGGAGAAGTTTACCAATTGAC 683
Query 657 TTAGCGGAAGG-GGTTCTACGGGCTCTTTGCTTGCAAGCACTT-GGCCAGGGTGTTGATA 714
|||| ||||| | || |||| || ||||||||||||||| || ||||||||||||||||
Sbjct 684 CTAGCAGAAGGAGCTT-TACGTGCACTTTGCTTGCAAGCA-TTAGGCCAGGGTGTTGATA 741
Query 715 TCCAACTTGGCATGGCGATTGATAGCT-CAAAGGCCACTCTTGCAGTAAAACGAAGACTT 773
|||||||||| |||||||||||||| | |||| ||||||||||| || || |||||||||
Sbjct 742 TCCAACTTGGGATGGCGATTGATAG-TGCAAAAGCCACTCTTGCCGTGAAGCGAAGACTT 800
Query 774 TCATGTGAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTTCCGTTA 833
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 801 TCATGTGAAATGGTGAAATACTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTA 860
Query 834 GCAAATGGTTGGGGAGAAAAGCAT-GGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAA 892
||||| || ||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 861 GCAAACGGGTGGGGCGAAAAGCATATG-CTCTTTGTTAAGTGGAAGTATGTTGAAGCTAA 919
Query 893 GGCTGCGGCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACA 952
|||||| ||||||||||| || ||| ||||||||||||||||||| |||||||| |||||
Sbjct 920 GGCTGCAGCTTACTACTACCACGGTCTGATTCTTGATGAAGGAAATACAGAGAAATCACA 979
Query 953 TGGCATGGCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTTAAAGAGAGTAAGAAAGC 1012
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 980 TGGCATGGCGGTTGCTGCTTTACAGGCTGCAGATGAGTGTTTGAAAGAAAGTAAGAAAGC 1039
Query 1013 ATCTGAAGCATTTAACGCCTCTTCACCTACTTCAAGGACACCGCCGCTATTT-GGAACAA 1071
| ||| || |||||| |||||||||| || |||||||| || | || ||| || ||||
Sbjct 1040 AAGTGAGGCGTTTAACACCTCTTCACCCACGTCAAGGACTCCTTCACT-TTTCGGGACAA 1098
Query 1072 TGAAGTATCTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTG 1131
|||| |||||| | |||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 1099 TGAAATATCTATCAGAGAAAATACCAAAAGAAACTTCAAGTAAAGTCAGGATAAACCGTG 1158
Query 1132 ATCTATACTCTTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGG 1191
||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||
Sbjct 1159 ATCTATACTCTTATGAAAAGATCATGGAGACAGCACCAACGCTTCCTGATTTTGCCTTGG 1218
Query 1192 CATTGAAACCAGATGAGTATCAACTTCCT-CTCGTCGAAGCTT-AGTAGTCTGAAG 1245
|||||||||| |||||||| ||||||||| || || || || | | | ||||||||
Sbjct 1219 CATTGAAACCCGATGAGTACCAACTTCCTTCT-GTTGATGCGTCA-TGGTCTGAAG 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5