BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920720
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17950.1 | Symbols: ATMYB52, BW52, MYB52 | myb domain protei... 1219 0.0
AT1G73410.1 | Symbols: ATMYB54, MYB54 | myb domain protein 54 |... 370 1e-101
AT5G17800.1 | Symbols: AtMYB56, MYB56 | myb domain protein 56 |... 187 1e-46
> AT1G17950.1 | Symbols: ATMYB52, BW52, MYB52 | myb domain protein
52 | chr1:6177617-6179289 FORWARD LENGTH=1123
Length=1123
Score = 1219 bits (660), Expect = 0.0
Identities = 748/789 (95%), Gaps = 12/789 (2%)
Strand=Plus/Plus
Query 5 GAGAGGAATTAGAAGAATGATGTGCAGTCGAGGCCATTGGAGACCTGCAGAAGATGAGAA 64
|||||| |||| || ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 133 GAGAGGTATTA-AAAAATGATGTGTAGTCGAGGCCATTGGAGACCTGCAGAAGACGAGAA 191
Query 65 GCTAAGAGAACTCGTCGAACAATTTGGTCCTCATAATTGGAACGCCATAGCTCAGAAGCT 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GCTAAGAGAACTCGTCGAACAATTTGGTCCTCATAATTGGAACGCCATAGCTCAGAAGCT 251
Query 125 CTCTGGTCGATCTGGCAAGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCTAGGAT 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CTCTGGTCGATCTGGTAAGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCTAGGAT 311
Query 185 TAACCGAAACCCTTTCACGGAGGAAGAAGAAGAAAGGCTTTTAGCGTCTCATCGGATCCA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TAACCGAAACCCTTTCACGGAGGAAGAAGAAGAAAGGCTTTTAGCGTCTCATCGGATCCA 371
Query 245 TGGGAATAGATGGTCTGTGATCGCTAGATTTTT-CCCAGGTCGAACCGATAACGCTGTTA 303
|||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct 372 TGGGAACAGATGGTCTGTGATCGCTAGATTTTTTCCC-GGTCGAACTGATAACGCTGTTA 430
Query 304 AAAACCATTGGCACGTCATCATGGCTCGTCGTGGCCGAGAACGGTCCAAGCTCCGACCAC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 431 AAAACCATTGGCACGTCATCATGGCTCGTCGTGGCCGAGAACGGTCCAAGCTCCGTCCAC 490
Query 364 GTGGCCATGGCCATGATGGCACGGTATCTGCGACTGGGATGATGGGTAATTATAACGACT 423
| |||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 491 GAGGCCTTGGCCATGATGGCACGGTGGCTGCGACTGGGATGATTGGTAATTATAAAGACT 550
Query 424 GCGATAAGGAGAGAAGATTGGCAACCACAACCGCTATCAATTTTCCTTATCAATTCTCTC 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 GCGATAAGGAGAGAAGATTGGCAACCACAACCGCTATCAATTTTCCTTATCAATTCTCTC 610
Query 484 ATATTAATCATTTTCAAGTCCTCAAAGAATTCTTGACCGGAAAGACCGGGTTCCGGAATA 543
|||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||
Sbjct 611 ATATTAATCATTTTCAAGTCCTCAAAGAGTTCTTGACCGGAAAGATCGGGTTCAGAAATA 670
Query 544 GTACTACTCCAATACAAGAAGGAGCAATAGACCAAACTAAACGACCGATGGAGTTCTACA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GTACTACTCCAATACAAGAAGGAGCAATAGACCAAACTAAACGACCGATGGAGTTCTACA 730
Query 604 ATTTTCTCCAATTAAACACGGATTCGAAGAAACCCGTAGTGATAGACAATTCAAGAAAAG 663
||||||| ||| |||||||||||||||||| || || | ||||||| |||||||||||||
Sbjct 731 ATTTTCTTCAAGTAAACACGGATTCGAAGATACACGAATTGATAGATAATTCAAGAAAAG 790
Query 664 ATGAAGAAGAAGAAGATGTCGCTCAAAACAACCG--T----AACGAGAATTGTGTTCCCT 717
| ||||||||||| ||||| |||||||||||| | ||||||||||||||||| |
Sbjct 791 ACGAAGAAGAAGA---TGTCGATCAAAACAACCGAATTCCTAACGAGAATTGTGTTCCAT 847
Query 718 TTTTCGACTTTTTGTCTGTTGGAAACTCTGCCTCTCAGGGTTTATGTTAATTAGTCCGTA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 848 TTTTCGACTTTTTGTCTGTTGGAAACTCTGCCTCTCAGGGTTTATGTTAATTTGTCCGTA 907
Query 778 CCACATGTA 786
|||||||||
Sbjct 908 CCACATGTA 916
> AT1G73410.1 | Symbols: ATMYB54, MYB54 | myb domain protein 54
| chr1:27601632-27603317 FORWARD LENGTH=1231
Length=1231
Score = 370 bits (200), Expect = 1e-101
Identities = 276/313 (88%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 24 ATGTGCAGTCGAGGCCATTGGAGACCTGCAGAAGATGAGAAGCT-AAGAGAACTCGTCGA 82
|||||||| ||||||||||||||||| || ||||| |||||||| ||| || || |||||
Sbjct 227 ATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAG-GATCTTGTCGA 285
Query 83 ACAATTTGGTCCTCATAATTGGAACGCCATAGCTCAGAAGC-TCTCTGGTCGATCTGGCA 141
||||| |||||||| |||||||||||||| |||| |||| || ||||||| ||||| |
Sbjct 286 ACAATACGGTCCTCACAATTGGAACGCCATTGCTCTCAAGCTTC-CTGGTCGCTCTGGTA 344
Query 142 AGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCTAGGATTAACCGAAACCCTTTCA 201
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 345 AGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCAAGGATCAACCGAAACCCTTTCA 404
Query 202 CGGAGGAAGAAGAAGAAAGGCTTTTAGCGTCTCATCGGATCCATGGGAATAGATGGTCTG 261
|||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 405 CGGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGGTCCA 464
Query 262 TGATCGCTAGATTTTTCCCAGGTCGAACCGATAACGCTGTTAAAAACCATTGGCACGTCA 321
| ||||| || ||||||| || |||| |||||||| || || ||||||||||||||||
Sbjct 465 TCATCGCAAGGCTTTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCACGTCA 524
Query 322 TCATGGCTCGTCG 334
|||||||||||||
Sbjct 525 TCATGGCTCGTCG 537
> AT5G17800.1 | Symbols: AtMYB56, MYB56 | myb domain protein 56
| chr5:5877189-5879331 FORWARD LENGTH=1290
Length=1290
Score = 187 bits (101), Expect = 1e-46
Identities = 242/308 (79%), Gaps = 18/308 (6%)
Strand=Plus/Plus
Query 33 CGAGGCCATTGGAGACCTGCAGAAGATGAGAAGCT-AAGAGAACTCGTCGAACAATTTGG 91
||||| || |||||||| ||||||||| || || ||| || || || | || |||||
Sbjct 335 CGAGGACACTGGAGACCAACAGAAGATGCTAAACTCAAG-GAGCTTGTTGCCCAGTTTGG 393
Query 92 TCCTCATAATTGGAACGCCATAGCTCAGAAGC-TCTCTGGTCGATCTGGCAAGAGTTGTA 150
||| || || |||||| || || | | | ||| |||| |||| |||||||||||||
Sbjct 394 TCCCCAAAACTGGAACTTGATTTCTAACCACCTTCT-TGGTAGATCAGGCAAGAGTTGTA 452
Query 151 GATTGAGATGGTTTAATCAATTGGATCCTAGGATTAACC-GAAACCCTTTCACGGAGGAA 209
|||||||||||||||| ||| | || || ||||||||| || | |||| ||||||||||
Sbjct 453 GATTGAGATGGTTTAACCAACTAGACCCAAGGATTAACAAGAGAGCCTT-CACGGAGGAA 511
Query 210 GAAGAAGAA-AGGCTTTTAGC-GTCTCATCGGATCC-ATGGGAATA-GATGGTCTGTGAT 265
||||| | ||||| ||||| | ||||||| | || |||| || | | ||| || ||||
Sbjct 512 GAAGA-GTTTAGGCTGTTAGCAG-CTCATCG-AGCCTATGGCAACAAG-TGGGCTTTGAT 567
Query 266 CGCTAGAT-T-TTTCCCAGGTCGAACCGATAACGCTGTTAAAAACCATTGGCACGTCATC 323
| || | | | ||||| |||||| |||||||||||||| || ||||||||||||||||||
Sbjct 568 CTCTCG-TCTCTTTCC-AGGTCGTACCGATAACGCTGTCAAGAACCATTGGCACGTCATC 625
Query 324 ATGGCTCG 331
||||||||
Sbjct 626 ATGGCTCG 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38278420014
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5