BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920730
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18050.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 311 1e-83
AT1G18060.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 111 1e-23
AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 63.9 3e-09
> AT1G18050.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein | chr1:6209771-6211588
REVERSE LENGTH=858
Length=858
Score = 311 bits (168), Expect = 1e-83
Identities = 346/425 (81%), Gaps = 40/425 (9%)
Strand=Plus/Plus
Query 68 CTCCGGCGGATGTACCTCC-ATGGGTTAGATATT-TGGCCGATAGCTCGGCCCGTTTGGT 125
||||||| ||||||||||| | || |||||||| | || |||||||| |||||||||||
Sbjct 425 CTCCGGCAGATGTACCTCCGA-GGACTAGATATTAT-GCGGATAGCTCAGCCCGTTTGGT 482
Query 126 ATTCAAATACGGGG-TTGAGATGGAGAG-TAGTATGATGACAAGCTATGCGAGAAACCCA 183
|||| | |||| |||||||||||| || |||||||||||||||||| ||||||||
Sbjct 483 TTTCATGGA-GGGGCCTGAGATGGAGAGAAAG-ATGATGACAAGCTATGCGGGAAACCCA 540
Query 184 GATTACTCCTTCTTCCGGAGCTCAGATCGTTATCACGCTTATTACCAGAAAAAGCTTGCT 243
| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 AAGTACTCCTTCTTCTGGAGCTCAGATCGTTATCATGCTTATTACCAGAAAAAGCTTGCT 600
Query 244 GAATACCGCGCGCAGA-AACATGAGGGACCTGAGATCAAA-TATAGTGATTATGGGATAG 301
| ||| | || | |||||||||||||||||||||| | ||||||||||||||||
Sbjct 601 GGATA-----C-CA-ATTACATGAGGGACCTGAGATCAAACT-TAGTGATTATGGGATAC 652
Query 302 CTGAAACTCCATTGAGGGTGAAGGTGAGGG-A--ACCG--T----TTCGAAAACCTCCCG 352
|||| |||||||||||||| ||| |||| | |||| | ||| ||||||| ||
Sbjct 653 CTGATGTTCCATTGAGGGTGAGGGTAAGGGAACCACCGCTTCAGATTCCAAAACCT-CC- 710
Query 353 AGTTGCAGGCCTATCTTCCT-GAAAGCTTTAG-TGACAAGATGAAGCGTCCGCCTCCACC 410
| | || | | || || | | | || ||| | |||||| ||||||||||||
Sbjct 711 ---T-CCGGGC--T-TTGCTAGTGACCAGAAGCCGAC-A-ATGAAGTATCCGCCTCCACC 761
Query 411 ACCTCGCAAGTATGCAGCTATACTCCCTAAATGGATCACTGGCAAAGAGCTTGAAACTAT 470
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 762 ACCTCGCAAGTATGCAGCTATACTCCCTGAATGGATTACTGGCAAAGAGCTTGAAACTAT 821
Query 471 CAAGG 475
|||||
Sbjct 822 CAAGG 826
> AT1G18060.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages; Has
74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria
- 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses -
0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:6211873-6213444
REVERSE LENGTH=1003
Length=1003
Score = 111 bits (60), Expect = 1e-23
Identities = 72/78 (92%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 920 GAGCATTGACATTCGAAGGAAGGTTTTCATGGAAGAATCGGATACTAGCTTTCGTATTCA 979
||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 561 GAGCATTAACATTCGAAGGAAGGTTTTCATGGAAGAATCGGATACTAGCTTTTGTCTTCG 620
Query 980 AACAGTTTCGCATAAAGA 997
||||| | ||||||||||
Sbjct 621 AACAGATCCGCATAAAGA 638
Score = 93.5 bits (50), Expect = 4e-18
Identities = 62/67 (93%), Gaps = 3/67 (4%)
Strand=Plus/Plus
Query 994 AAGACGCCGAGTAATAAAGACCCTTTCTTCATTTGGTT-TAACATCGATGAGGAAATAGC 1052
|||| ||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 690 AAGA-GCCTAGTAATAAAGACCCTTTCTTCATTTGGTTCTA-CATCGATGAAGAAATAGC 747
Query 1053 CGTTGCT 1059
|||||||
Sbjct 748 CGTTGCT 754
> AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein | chr5:3972014-3973636
REVERSE LENGTH=1260
Length=1260
Score = 63.9 bits (34), Expect = 3e-09
Identities = 45/50 (90%), Gaps = 2/50 (4%)
Strand=Plus/Plus
Query 865 TTTGACGAATCAGCCCTT-TCTCCAGAAGACCAGTTTCTTGCTCAACATC 913
|||||||| || | |||| | |||||||||||||||||||||||||||||
Sbjct 973 TTTGACGAGTCTGTCCTTGT-TCCAGAAGACCAGTTTCTTGCTCAACATC 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54668393505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5