BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920730 Length=1115 Score E Sequences producing significant alignments: (Bits) Value AT1G18050.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 311 1e-83 AT1G18060.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 111 1e-23 AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 63.9 3e-09 > AT1G18050.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | chr1:6209771-6211588 REVERSE LENGTH=858 Length=858 Score = 311 bits (168), Expect = 1e-83 Identities = 346/425 (81%), Gaps = 40/425 (9%) Strand=Plus/Plus Query 68 CTCCGGCGGATGTACCTCC-ATGGGTTAGATATT-TGGCCGATAGCTCGGCCCGTTTGGT 125 ||||||| ||||||||||| | || |||||||| | || |||||||| ||||||||||| Sbjct 425 CTCCGGCAGATGTACCTCCGA-GGACTAGATATTAT-GCGGATAGCTCAGCCCGTTTGGT 482 Query 126 ATTCAAATACGGGG-TTGAGATGGAGAG-TAGTATGATGACAAGCTATGCGAGAAACCCA 183 |||| | |||| |||||||||||| || |||||||||||||||||| |||||||| Sbjct 483 TTTCATGGA-GGGGCCTGAGATGGAGAGAAAG-ATGATGACAAGCTATGCGGGAAACCCA 540 Query 184 GATTACTCCTTCTTCCGGAGCTCAGATCGTTATCACGCTTATTACCAGAAAAAGCTTGCT 243 | |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 541 AAGTACTCCTTCTTCTGGAGCTCAGATCGTTATCATGCTTATTACCAGAAAAAGCTTGCT 600 Query 244 GAATACCGCGCGCAGA-AACATGAGGGACCTGAGATCAAA-TATAGTGATTATGGGATAG 301 | ||| | || | |||||||||||||||||||||| | |||||||||||||||| Sbjct 601 GGATA-----C-CA-ATTACATGAGGGACCTGAGATCAAACT-TAGTGATTATGGGATAC 652 Query 302 CTGAAACTCCATTGAGGGTGAAGGTGAGGG-A--ACCG--T----TTCGAAAACCTCCCG 352 |||| |||||||||||||| ||| |||| | |||| | ||| ||||||| || Sbjct 653 CTGATGTTCCATTGAGGGTGAGGGTAAGGGAACCACCGCTTCAGATTCCAAAACCT-CC- 710 Query 353 AGTTGCAGGCCTATCTTCCT-GAAAGCTTTAG-TGACAAGATGAAGCGTCCGCCTCCACC 410 | | || | | || || | | | || ||| | |||||| |||||||||||| Sbjct 711 ---T-CCGGGC--T-TTGCTAGTGACCAGAAGCCGAC-A-ATGAAGTATCCGCCTCCACC 761 Query 411 ACCTCGCAAGTATGCAGCTATACTCCCTAAATGGATCACTGGCAAAGAGCTTGAAACTAT 470 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 762 ACCTCGCAAGTATGCAGCTATACTCCCTGAATGGATTACTGGCAAAGAGCTTGAAACTAT 821 Query 471 CAAGG 475 ||||| Sbjct 822 CAAGG 826 > AT1G18060.1 | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:6211873-6213444 REVERSE LENGTH=1003 Length=1003 Score = 111 bits (60), Expect = 1e-23 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 920 GAGCATTGACATTCGAAGGAAGGTTTTCATGGAAGAATCGGATACTAGCTTTCGTATTCA 979 ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 561 GAGCATTAACATTCGAAGGAAGGTTTTCATGGAAGAATCGGATACTAGCTTTTGTCTTCG 620 Query 980 AACAGTTTCGCATAAAGA 997 ||||| | |||||||||| Sbjct 621 AACAGATCCGCATAAAGA 638 Score = 93.5 bits (50), Expect = 4e-18 Identities = 62/67 (93%), Gaps = 3/67 (4%) Strand=Plus/Plus Query 994 AAGACGCCGAGTAATAAAGACCCTTTCTTCATTTGGTT-TAACATCGATGAGGAAATAGC 1052 |||| ||| ||||||||||||||||||||||||||||| || ||||||||| |||||||| Sbjct 690 AAGA-GCCTAGTAATAAAGACCCTTTCTTCATTTGGTTCTA-CATCGATGAAGAAATAGC 747 Query 1053 CGTTGCT 1059 ||||||| Sbjct 748 CGTTGCT 754 > AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | chr5:3972014-3973636 REVERSE LENGTH=1260 Length=1260 Score = 63.9 bits (34), Expect = 3e-09 Identities = 45/50 (90%), Gaps = 2/50 (4%) Strand=Plus/Plus Query 865 TTTGACGAATCAGCCCTT-TCTCCAGAAGACCAGTTTCTTGCTCAACATC 913 |||||||| || | |||| | ||||||||||||||||||||||||||||| Sbjct 973 TTTGACGAGTCTGTCCTTGT-TCCAGAAGACCAGTTTCTTGCTCAACATC 1021 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54668393505 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5