BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920731 Length=375 Score E Sequences producing significant alignments: (Bits) Value AT3G44110.1 | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:1586... 219 2e-56 AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxi... 65.8 3e-10 > AT3G44110.1 | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15868794-15871256 REVERSE LENGTH=1781 Length=1781 Score = 219 bits (118), Expect = 2e-56 Identities = 145/158 (92%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 157 AGTTAGCTCAAGCTTATGAAGTTCTTAGTGACCTGGAGAAGTGGGAGATTTATGACCAGT 216 ||||||| |||||||||||||| |||||||||| ||||||| | |||||||||||||||| Sbjct 358 AGTTAGCACAAGCTTATGAAGTGCTTAGTGACCCGGAGAAGCGTGAGATTTATGACCAGT 417 Query 217 ATGGAGAGGATGCACTCAAGGAAGGAAATTG-TGGTGGAGGAGGTAGACATGATCCATTT 275 ||||||||||||||||||||||||||| | | ||||||||||||| |||||||||||||| Sbjct 418 ATGGAGAGGATGCACTCAAGGAAGGAA-TGGGTGGTGGAGGAGGTGGACATGATCCATTT 476 Query 276 GTTATTTTCTCATCCTTTTTTGGTGGAAGCCCGTTTGG 313 | ||||||||||||||| ||||||||| |||| ||||| Sbjct 477 GATATTTTCTCATCCTTCTTTGGTGGAGGCCCCTTTGG 514 > AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide dismutase 1 | chr3:3417954-3419853 FORWARD LENGTH=1029 Length=1029 Score = 65.8 bits (35), Expect = 3e-10 Identities = 37/38 (97%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 85 GATCCATTAGTGACAAAAGGAGGAAGCTTGATACCTCT 122 |||||||||||||||||||||||||||||| ||||||| Sbjct 587 GATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCT 624 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17643979899 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5