BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920731

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44110.1 | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:1586...   219    2e-56
  AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxi...  65.8    3e-10


> AT3G44110.1 | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15868794-15871256 
REVERSE LENGTH=1781
Length=1781

 Score =  219 bits (118),  Expect = 2e-56
 Identities = 145/158 (92%), Gaps = 2/158 (1%)
 Strand=Plus/Plus

Query  157  AGTTAGCTCAAGCTTATGAAGTTCTTAGTGACCTGGAGAAGTGGGAGATTTATGACCAGT  216
            ||||||| |||||||||||||| |||||||||| ||||||| | ||||||||||||||||
Sbjct  358  AGTTAGCACAAGCTTATGAAGTGCTTAGTGACCCGGAGAAGCGTGAGATTTATGACCAGT  417

Query  217  ATGGAGAGGATGCACTCAAGGAAGGAAATTG-TGGTGGAGGAGGTAGACATGATCCATTT  275
            ||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||
Sbjct  418  ATGGAGAGGATGCACTCAAGGAAGGAA-TGGGTGGTGGAGGAGGTGGACATGATCCATTT  476

Query  276  GTTATTTTCTCATCCTTTTTTGGTGGAAGCCCGTTTGG  313
            | ||||||||||||||| ||||||||| |||| |||||
Sbjct  477  GATATTTTCTCATCCTTCTTTGGTGGAGGCCCCTTTGG  514


> AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide 
dismutase 1 | chr3:3417954-3419853 FORWARD LENGTH=1029
Length=1029

 Score = 65.8 bits (35),  Expect = 3e-10
 Identities = 37/38 (97%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  85   GATCCATTAGTGACAAAAGGAGGAAGCTTGATACCTCT  122
            |||||||||||||||||||||||||||||| |||||||
Sbjct  587  GATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCT  624



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5