BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920732
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18060.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1136 0.0
> AT1G18060.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages; Has
74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria
- 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses -
0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:6211873-6213444
REVERSE LENGTH=1003
Length=1003
Score = 1136 bits (615), Expect = 0.0
Identities = 683/716 (95%), Gaps = 3/716 (0%)
Strand=Plus/Plus
Query 6 AGCTTCTCAGAGACGATGATGGTCTCACTAGCTTCATGGGTTTCGTCCCCATCTTCTTC- 64
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 116 AGCTTCTCAGAGACGATGATGGTCTCACTAGCTTCATGTGTTTCGTCCCCATCTTCTTCG 175
Query 65 TCTC--TTCCTTAGTCGTCGCGAGAGATTACATTTGGTGAAAGCCACGGTCGATGGTAGG 122
|||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 176 TCTCTGTTCTTTAGTCGTCGGGAGAGATTACATTTGGTGAAAGCCACGGTGGATGGCAGG 235
Query 123 AACCAGATTGTCCCACCGGCAAAAGAGCAAATCCCTAACAAAGAAGTAACGGAGAGTGTG 182
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 236 AACCAGATTGTCCCACCGGCAAAAGATCAAATCCCTAACAAACAAGTAACGGAGAGTGTG 295
Query 183 AATGTGTTAAAAACCGCTGCAAAAACTCGGAAAGTTGCAGCAGATGAGATTTTAGCTGCT 242
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AATGTATTAAAAACGGCTGCAAAAACTCGGAAAGTTGCAGCAGATGAGATTTTAGCTGCT 355
Query 243 TTTTCTGCTATTGAAAAGGCTAAGATTGATCCATCCACATTCCTTGAAACCCTTGGTGGT 302
|| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 356 TTCTCTGCTATCGAAAAGGCTAAGATTGATCCATCCACTTTCCTTGAAACGCTTGGTGGT 415
Query 303 ACCGAGTCTCCTGGACGAACATGGATGCTCATCTTCACCGCCGAGAAGAAACTGAAGAAA 362
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 416 CCCGAGTCTCCTGGACGAACATGGATGCTTATCTTCACCGCCGAGAAGAAACTGACGAAA 475
Query 363 GGTCGTTATTTCCCTCTAACCGCTGTTCAGAGATTTGATGCTGCGGGAAAAAGAATAGAG 422
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGTCGTTATTTCCCTCTAACTGCTGTTCAGAGATTTGATGCTGCGGGAAAAAGAATAGAG 535
Query 423 AATGGGGTGTATCTTGGTCCATTAGGAGCATTAACATTCGAAGGAAGGTTTTCTTGGAAG 482
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 536 AATGGGGTGTATCTTGGTCCATTTGGAGCATTAACATTCGAAGGAAGGTTTTCATGGAAG 595
Query 483 AACCGGATACTAGCTTTTGTCTTCGAACAGATCCGCATAAAGATTGGACCATTAGATCCT 542
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AATCGGATACTAGCTTTTGTCTTCGAACAGATCCGCATAAAGATTGGACCATTAGATCCT 655
Query 543 CTAGAGATCAGTTTGGGGAAGAAAGACGCCGAGGAAGAGCCGAGTAATAAAGACCCTTTC 602
|||||| |||| ||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 656 CTAGAGTTCAGCTTGGGGAAGAAAGACGCTGTGGAAGAGCCTAGTAATAAAGACCCTTTC 715
Query 603 TTCATTTGGTTTTACATCGATGAAGAAATAGCCGTTGCTCGAGGAAGAAGTGGCGGTACA 662
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 716 TTCATTTGGTTCTACATCGATGAAGAAATAGCCGTTGCTCGAGGTAGAAGTGGCGGTACA 775
Query 663 GCTTTCTGGTGTCGTTGTCGCCGCATTGCTTCCTCATGACTCTCTTCTTCTTCTCA 718
|||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||
Sbjct 776 GCTTTCTGGTGTCGTTGTCGTCGCATTGCTTCCTAATGACTCTCTTCTACTTCTCA 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5