BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920734
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18080.1 | Symbols: ATARCA, RACK1A_AT, RACK1A | Transducin/W... 1805 0.0
AT1G48630.1 | Symbols: RACK1B_AT | receptor for activated C kin... 712 0.0
> AT1G18080.1 | Symbols: ATARCA, RACK1A_AT, RACK1A | Transducin/WD40
repeat-like superfamily protein | chr1:6222201-6224151
FORWARD LENGTH=1358
Length=1358
Score = 1805 bits (977), Expect = 0.0
Identities = 1060/1101 (96%), Gaps = 2/1101 (0%)
Strand=Plus/Plus
Query 1 ATAGCTTCTTCTGTTTTTCTCGCCCTTCTTCTTTGTATTTCCGCCTCCCCCGAGAAAACG 60
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 28 ATAGCTTCTTGTGTTTTTCACGCCCTTCTTCTTTGTATTTCCGCCTCCCCCGAGAAAACG 87
Query 61 AAAACCCTAGCTTCAGAGACATCTCCAGTCACCGAAAATGGCGGAAGGACTCGTTTTGAA 120
|||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 88 AAAACCCTAGTTTCAGAGGCATCTCCAGACACCGAAAATGGCGGAAGGACTCGTTTTGAA 147
Query 121 AGGCACCATGCGTGCACACACTGACATGGTGACGGCAATCGCCACCCCAATCGATAACGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GGGCACCATGCGTGCACACACTGACATGGTGACGGCAATCGCCACCCCAATCGATAACGC 207
Query 181 AGACATCATCGTCTCAGCTTCCCGCGACAAATCCATCATTTTGTGGAAACTCACCAAGGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 AGACATCATCGTCTCAGCTTCCCGCGACAAATCCATCATTTTGTGGAAACTCACCAAGGA 267
Query 241 CGACAAAGCCTACGGTGTAGCTCAGAGGCGTCTCACTGGTCACTCTCACTTCGTTGAGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CGACAAAGCCTACGGTGTAGCTCAGAGGCGTCTCACTGGTCACTCTCACTTCGTTGAGGA 327
Query 301 TGTTGTTCTCTCCTCCGATGGACAATTCGCGCTTTCCGGTAGCTGGGACGGCGAGCTCCG 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 328 TGTTGTTCTCTCCTCCGATGGACAATTCGCGCTTTCCGGCAGCTGGGACGGCGAGCTCCG 387
Query 361 TCTTTGGGATCTCGCTGCTGGTGTCTCCACTCGTAGATTCGTTGGACACACCAAGGACGT 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TCTTTGGGATCTTGCTGCTGGTGTCTCCACTCGTAGATTCGTTGGACACACCAAGGACGT 447
Query 421 GCTCTCCGTCGCATTCTCACTCGACAACCGTCAGATCGTCTCTGCGTCTCGTGACCGTAC 480
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 448 GCTCTCCGTCGCCTTCTCACTCGACAACCGTCAGATCGTCTCTGCATCTCGTGACCGTAC 507
Query 481 GATCAAGCTATGGAACACTCTAGGTGAGTGCAAGTACACGATCTCAGAAGGTGGTGAGGG 540
||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 508 GATCAAGCTGTGGAACACTCTTGGTGAGTGCAAGTACACCATTTCAGAAGGTGGTGAGGG 567
Query 541 ACACCGTGATTGGGTTAGCTGCGTCAGATTCAGCCCCAACACTCTCCAGCCGACGATTGT 600
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 568 ACACCGTGATTGGGTTAGCTGCGTCAGATTCAGCCCTAACACGCTTCAGCCGACGATTGT 627
Query 601 GTCAGCTTCGTGGGACAAAACCGTGAAAGTGTGGAACCTCTCGAACTGCAAGCTCAGATC 660
|| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 628 ATCTGCTTCGTGGGACAAGACCGTGAAAGTGTGGAACCTTTCGAACTGCAAGCTCAGATC 687
Query 661 GACTCTTGCTGGTCACACCGGATACGTGAGCACGGTGGCTGTATCACCTGATGGTTCTCT 720
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 688 GACTCTTGCTGGTCACACCGGTTACGTGAGCACTGTGGCTGTATCACCTGATGGTTCTCT 747
Query 721 TTGTGCAAGTGGAGGCAAAGACGGTGTGGTTTTGCTTTGGGATTTGGCTGAGGGGAAGAA 780
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 748 TTGTGCAAGTGGAGGCAAAGACGGTGTTGTTTTGCTGTGGGATTTGGCTGAGGGGAAGAA 807
Query 781 GCTTTACTCTCTTGAAGCTAACTCTGTGATCCATGCTCTTTGCTTCAGTCCCAACAGGTA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GCTTTACTCTCTTGAAGCTAACTCTGTGATCCATGCTCTTTGCTTCAGTCCCAACAGGTA 867
Query 841 CTGGCTCTGTGCTGCAACTGAACAAGGTATCAAGATTTGGGACCTGGAGAGCAAGAGCAT 900
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 868 CTGGCTCTGTGCTGCAACTGAACATGGTATTAAGATTTGGGACCTTGAGAGCAAGAGCAT 927
Query 901 CGTTGAGGATTTGAAGGTTGACCTCAAGGCTGAGGCTGAGAAGTCTGACAACAGTGGTCC 960
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 928 TGTTGAGGATTTGAAGGTTGATCTCAAGGCTGAGGCTGAAAAGGCTGACAACAGTGGTCC 987
Query 961 TGCTGCCACCAAGAGGAAGGTTATTTACTGTACAAGT-TTGAACTGGAGCGCTGATGGAA 1019
|||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 988 TGCTGCCACCAAGAGGAAGGTTATTTACTGCACAAGCCTT-AACTGGAGCGCTGATGGAA 1046
Query 1020 GCACCTTGTTCAGTGGTTATACCGATGGAGTCATCAGAGTTTGGGGTATTGGTCGTTACT 1079
||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1047 GCACCCTCTTCAGTGGTTACACCGATGGAGTCATTAGAGTTTGGGGTATTGGTCGTTACT 1106
Query 1080 AGTAATCTCACCACTTGTGCT 1100
|||||||||| ||||||||||
Sbjct 1107 AGTAATCTCATCACTTGTGCT 1127
> AT1G48630.1 | Symbols: RACK1B_AT | receptor for activated C kinase
1B | chr1:17981773-17983327 REVERSE LENGTH=1244
Length=1244
Score = 712 bits (385), Expect = 0.0
Identities = 798/997 (80%), Gaps = 29/997 (3%)
Strand=Plus/Plus
Query 98 ATGGCGGAAGGACTCGTTTTGAAAGGCACCATGCGTGCACACACTGACATGGTGACGGCA 157
||||| ||||||||||| ||||||||||| ||| |||| |||||||| ||||| || ||
Sbjct 60 ATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGATATGGTCACCGCC 119
Query 158 ATCGCCACCCCAATCGATAACGCAGACATCATCGTCTCAGCTTCCCGCGACAAATCCATC 217
|| || || || |||||||| | ||| | || || | | || || |||||||| |||
Sbjct 120 ATTGCTACACCGGTCGATAACTCCGACGTGATTGTAACTTCGTCGCGTGACAAATCAATC 179
Query 218 ATTTTGTGGAAACTCACCAAGGACGACAAAG-CCTACGGTGTAGCTCAGAGGCGTCTCAC 276
|| | ||||||||||| ||||| ||| ||| | |||||||| |||||| || | | ||
Sbjct 180 ATCCTCTGGAAACTCACAAAGGAAGAC-AAGTCATACGGTGTTGCTCAGCGGAGGATGAC 238
Query 277 TGGTCACTCTCACTTCGTTGAGGATGTTGTTCTCTCCTCCGATGGACAATTCGCGCTTTC 336
||||||||||||||||||| | || ||||||||||||||||||||||||||||| || ||
Sbjct 239 TGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACAATTCGCTCTCTC 298
Query 337 CGGTAGCT-GGGACGGCGAGCTCCGTCTTTGGGATCTCGCTGCTGGTGTCTCCACTCGTA 395
||| | || ||||||| ||||| ||||| |||||||||||| | || | || ||||||
Sbjct 299 CGG-ATCTTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCTACCGGAGAATCTACTCGTC 357
Query 396 GATTCGTTGGACACACCAAGGACGTGCTCTCCGTCGCATTCTC-ACTCGACAACCGTCAG 454
| |||||||| ||||| || || || ||||| || || ||||| || ||| |||||||||
Sbjct 358 GTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTAC-CGATAACCGTCAG 416
Query 455 ATCGTCTCTGCGTCTCGTGACCGTACGATCAAGCTATGGAACACTCTAGGTGAGTGCAAG 514
||||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| |||
Sbjct 417 ATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACGCTTGGTGAGTGTAAG 476
Query 515 TACACGATCTCAGAAGGTGGTGAGGGACACCGTGATTGGGTTAGCTGCGTCAGATTCAGC 574
|| || ||||| |||| || || | ||| | || |||||||| || || || || ||
Sbjct 477 TATACCATCTCTGAAGCTGATG-GTCACAA-G-GAATGGGTTAGTTGTGTTAGGTTTAGT 533
Query 575 CCCAACACTCTCCAGCCGACGATTGTGTCAGCTTCGTGGGACAAAACCGTGAAAGTGTGG 634
|| || ||||| ||| || ||||| || ||||| ||||| ||||| ||||| || |||
Sbjct 534 CCTAATACTCTTGTGCCAACTATTGTATCTGCTTCTTGGGATAAAACTGTGAAGGTCTGG 593
Query 635 AACCTCTC-GAACTGCAAGCTCAG-ATCGACTCTTGCTGGTCACACCGGATACGTGAGCA 692
|| || || ||| || ||||| || | | ||||||||||||||| | || ||| ||| ||
Sbjct 594 AATCT-TCAGAATTGTAAGCTTAGGAAC-ACTCTTGCTGGTCACTCTGGTTACTTGAACA 651
Query 693 CGGTGGCTGTATCACCTGATGGTTCTCTT-TGTGCAAGTGGAGGCAAAGACGGTGTGGTT 751
| |||||||| |||||||||||||| || ||||| ||||| |||||||| |||||| |
Sbjct 652 CTGTGGCTGTGTCACCTGATGGTTCG-TTGTGTGCCAGTGGTGGCAAAGATGGTGTGATC 710
Query 752 TTGCTTTGGGATTTGGCTGAGGGGAAGAAGCTT-TACTCTCTTGAAGCTAACTCTGTGAT 810
|||||||||||||||||||| ||||||||| || || |||||||||||| |||| | ||
Sbjct 711 TTGCTTTGGGATTTGGCTGAAGGGAAGAAG-TTGTATTCTCTTGAAGCTGGCTCTATTAT 769
Query 811 CCATGCTCTTTGCTTCAGTCCCAACAGGTACTGGCTCTGTGCTGCAACTGA-ACA-AGGT 868
||| | ||||||||||||||||| ||||||||| | ||||| ||||| || | | ||
Sbjct 770 TCATTCACTTTGCTTCAGTCCCAATAGGTACTGGTTGTGTGCAGCAACAGAGA-ATAGC- 827
Query 869 ATCAAGATTTGGGACCTGGAGAGCAAGAGCA-TCGTTGAGGATTTGAAGGTTGACCTCAA 927
|| | ||||||||| || ||||| ||| | | |||||||||||||||||||| || ||
Sbjct 828 ATTAGGATTTGGGATCTCGAGAGTAAGT-CTGTTGTTGAGGATTTGAAGGTTGATCTTAA 886
Query 928 GGCTGAGGCTGAGAAGTCTGACAA--C-AGTGGTCCTGCTGCCACCAAGAGGAAGGTTAT 984
|||||||||||| ||| |||| | | ||| | | | || |||| ||||| ||
Sbjct 887 GGCTGAGGCTGAAAAGACTGATGGTTCTACTGGAA-T-CGGAAAC-AAGACCAAGGTGAT 943
Query 985 TTACTGTACAAGTTTGAACTGGAGCGCTGATGGAAGCACCTTGTTCAGTGGTTATACCGA 1044
||||| ||||| ||||||||||| || ||||||| ||| ||||||||||| || || ||
Sbjct 944 CTACTGCACAAGCTTGAACTGGAGTGCAGATGGAAACACTTTGTTCAGTGGATACACTGA 1003
Query 1045 TGGAGTCATCAGAGTTTGGGGTATTGGTCGTTACTAG 1081
|||||| ||||| ||||||||||||||||||||||||
Sbjct 1004 TGGAGTTATCAGGGTTTGGGGTATTGGTCGTTACTAG 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5