BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920735
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18090.1 | Symbols: | 5'-3' exonuclease family protein | ch... 2745 0.0
AT1G18100.1 | Symbols: E12A11, MFT | PEBP (phosphatidylethanola... 732 0.0
> AT1G18090.1 | Symbols: | 5'-3' exonuclease family protein |
chr1:6224501-6227822 FORWARD LENGTH=1879
Length=1879
Score = 2745 bits (1486), Expect = 0.0
Identities = 1681/1777 (95%), Gaps = 6/1777 (0%)
Strand=Plus/Plus
Query 1 AAGAAGATAAGAAATCGGAAATGGGCATCAAGGACCTTCTCAGATTCATGAAACCTTACA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 19 AAGAAGATAAGAAATCGGAAATGGGCATCAAGGACCTTCTCAGATTCATGAAACCTTATA 78
Query 61 TCCTTCCCATTCACATCCAGAAATACGCCGGGAAACGAGTGGGAATCGATGCATATTCAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 79 TCCTTCCCATTCACATCCAGAAATACGCCGGGAAACGAGTGGGAATCGATGCTTATTCAT 138
Query 121 GGCTACACAAAGGAGCATACTCATGTAGTATGGAGCTGTGTTTAGACACTGATGGGAAGA 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 139 GGCTACACAAAGGAGCATACTCATGTAGTATGGAGTTGTGTTTAGACACTGATGGGAAGA 198
Query 181 AGAAGCTGAGGTACATTGATTACTTCATGCACAGAGTCAACCTTCTTCAACACTATGAGA 240
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 199 AGAAGCTGAGGTACATTGATTACTTTATGCATAGAGTCAACCTTCTTCAACACTATGAGA 258
Query 241 TCATCCCTGTCGTTGTTCTCGATGGTGGTAATATGCCCTGCAAGGCTGCCACTGGAGATG 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 259 TCATTCCTGTCGTTGTTCTCGATGGTGGTAATATGCCCTGCAAGGCTGCCACTGGTGATG 318
Query 301 AACGTCATAGGAAGCGAAAGGCTAACTTTGACGCTGCAATGGTGAAGCTTAAGGAAGGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 319 AACGTCATAGGAAGCGAAAGGCTAACTTTGACGCTGCAATGGTGAAGCTGAAGGAAGGGA 378
Query 361 ATGTCGGAGCAGCAACTGAGCTTTTTCAGAGAGCAGTTAGTGTAACATCATCCATGGCTC 420
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ATGTCGCAGCAGCTACTGAGCTTTTTCAGAGAGCAGTTAGTGTAACATCATCCATGGCTC 438
Query 421 ATCAATTGATTCAGGTTCTGAAATCAGAGAACGTCGAGTTTATTGTAGCTCCCTATGAGG 480
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 439 ATCAATTGATTCAGGTTCTGAAATCAGAAAACGTCGAATTTATTGTAGCTCCCTATGAGG 498
Query 481 CTGATGCTCAGCTAGCATACCTATCCAGCCTCGATCTGGAACATGGTGGGATTGCTGCAG 540
|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |
Sbjct 499 CTGATGCTCAGCTAGCATACCTATCCAGCCTCGAACTGGAACAAGGCGGGATTGCTGCTG 558
Query 541 TTATTACCGAGGACAGTGATTTACTTGCATATGGCTGCAAAGCTGTTATTTTTAAGATGG 600
|||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 559 TTATAACCGAAGACAGCGATTTACTTGCATATGGCTGCAAAGCTGTTATCTTTAAGATGG 618
Query 601 ACCGCTATGGTAAAGGAGAGGAACTAATTCTAGATAATGTTTTCCAAGCCGTTGATCAAA 660
|||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 619 ACCGCTATGGTAAAGGAGAGGAACTAGTTCTAGATAATGTTTTTCAAGCTGTTGATCAAA 678
Query 661 AGCCTTCCTTCCAGAATTTTGATCAAGAGCTATTCACTGCAATGTGCGTATTAGCGGGCT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 679 AGCCTTCCTTCCAGAATTTTGATCAAGAGCTATTCACTGCAATGTGCGTATTGGCGGGCT 738
Query 721 GTGATTTTCTCCCATCGGTTCCTGGTGTTGGCATTTCAAGAGCTCATGCATTCATCTCCA 780
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 739 GTGATTTTCTCCCCTCGGTTCCTGGTGTTGGTATTTCAAGAGCTCATGCATTCATCTCCA 798
Query 781 AGTACCAGAGTGTAGAACGT-GTTTTGTCATTTCTCAAGACAAAAAAGGGCAAACTAGTT 839
|||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 799 AGTACCAGAGTGTAGAAC-TCGTTTTGTCATTTCTCAAGACAAAAAAAGGCAAACTAGTT 857
Query 840 CCTGATGATTATTCCAGCTCTTTCACGGAAGCAGTTTCAGTTTTTCAGCATGCTCGTGTA 899
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 858 CCTGATGATTATTCCAGCTCTTTCACGGAAGCAGTTTCAGTTTTTCAGCACGCACGTGTA 917
Query 900 TATGACTTTGATGCTAAGAAGCTCAAGCACTTGAAACCCCTCTCCCAGAACCTCCTGAAT 959
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 918 TATGACTTTGACGCTAAGAAGCTCAAGCACTTGAAACCCCTCTCCCACAACCTCCTGAAT 977
Query 960 TTACCAGTTGGACAACTTGAGTTCCTGGGACCAGATCTATCGCCATCTGTTGCTGCTGCA 1019
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 978 TTACCAGTTGAACAACTTGAGTTCCTGGGACCAGATCTGTCGCCATCTGTTGCTGTTGCA 1037
Query 1020 GTTGCTGAAGGTAATATTGATCCCATAACCATGGAGGCTTTTAACCGCTTCTCGGTTCCT 1079
|||||||||||||| ||||||||||||||||| | |||||||||| |||||||||| ||
Sbjct 1038 ATTGCTGAAGGTAATGTTGATCCCATAACCATGAAAGCTTTTAACCACTTCTCGGTTTCT 1097
Query 1080 AGGAGACAGTTGCAAAA-GCCTGTTCGATCATTCAAGGAACAGGAAAAGGAAAGCTCCTT 1138
|||| || |||| || | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1098 AGGAAACCGTTG-AAGACGCCTGTTCGATCATTCAAGGAACAGGAAAAGGGAAGCTCCTT 1156
Query 1139 TTTGGTGTGTTCTTCGTCTAAAAGTGAGGAAAGAATAGAGCTCAAAAGGACTGCAGATGA 1198
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1157 TTTGGTATGTTCTTTGTCTAAAAGTGAGGAAATAATAGAGCTCAAAAGGACTGCAGATGA 1216
Query 1199 AGCTATGATTGATCCAGAAGCTACTCTGAAGAAGGCGATGTACTCTAAACAAGATTCAGA 1258
||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 1217 AGCTATGATTGATCCAGAAGCTATTGTGAAGAAGAAGATGTACTCTAAACAAGATTCAGA 1276
Query 1259 TCTACACAAACTGCTTTCGCAGCCTAACAGGGATCAGGTGGTTATCC-AGCCCAGCAATC 1317
|||| ||||||||||| ||||||||||||||||||| ||||||| || | ||||||||||
Sbjct 1277 TCTATACAAACTGCTTGCGCAGCCTAACAGGGATCAAGTGGTTACCCGA-CCCAGCAATC 1335
Query 1318 TCTCACTTATTCCAGACAACAACCCGTTCAAGATAAGAAAAACCGATGAAATCAATCTAG 1377
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1336 CCTCACTTATTCCGGACAACAACCCGTTCAAGATTAGAAAAACCGATGAAATCAATCTGG 1395
Query 1378 AATTTGCAGAGTACGGTTTGCAAGAACTCGCTGTTTCATTTGTGACCAAAAGCAAAGCAA 1437
|| | ||||| |||||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1396 AAATCGCAGAATACGGTGTGCAAGAACTCGCTGATTCGTTTGTGACCAAAAGCAAAGCAG 1455
Query 1438 CGGACGTGGCTTCTTCTTCACCAAACTCTCACGGACACGAGGATCAAAAAGAGGGTGTTA 1497
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1456 TGGACGTGGCTTCTTCTTCACCAAACTCTCACGAACACGAGGATCAAAAAGAGTGTGTTA 1515
Query 1498 CAATCGATTTGCCCAAGCTTGAAGATTCTGGAATCAAACAAGACTCTGCGAAGAACACAG 1557
|||||||| || |||| ||||| | ||||||||||||| ||| || |||||||| ||
Sbjct 1516 CAATCGATCTGTCCAAACTTGATGCCGCTGGAATCAAACAGGACAGTGAGAAGAACAGAG 1575
Query 1558 TGAAAGAAACATTTGAAACAACAGAGGTAGATATAGCTGAAGTTCAAGATCATGTGAACA 1617
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1576 TGAAAGAAACATTTGAAACAACAGAAGTAGATCTAGCTGAAGTTCAAGATCATGTGAACA 1635
Query 1618 TGACGACAAAGAGAGTGCGTGGAGCAAAACCTAGAACCGAGAGTTTCAAAGTGAAAACAA 1677
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1636 TGACGACAAAGAGAGTGCGTGGAACAAAACCTAGAACCGAGAATTTCAAAGTGAAAACAA 1695
Query 1678 GCTGTAAAAATTCAGAGAACAAGAAGACTACAATCAAGAAAAAACACAGTATATTAGATT 1737
||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||||
Sbjct 1696 GCTGTAAAAGTTCAGAGAACAACAAGACTATAATCAAGAAGAAACACAGTATATTAGATT 1755
Query 1738 TCTTCCATCGATTGTAATCTCTTTAATTTTGGTATGT 1774
||||||| |||||||||||||||||||||||||||||
Sbjct 1756 TCTTCCAGCGATTGTAATCTCTTTAATTTTGGTATGT 1792
> AT1G18100.1 | Symbols: E12A11, MFT | PEBP (phosphatidylethanolamine-binding
protein) family protein | chr1:6227217-6230188
REVERSE LENGTH=1432
Length=1432
Score = 732 bits (396), Expect = 0.0
Identities = 479/520 (92%), Gaps = 2/520 (0%)
Strand=Plus/Minus
Query 1256 AGATCTACACAAACTGCTTTCGCAGCCTAACAGGGATCAGGTGGTTATCCAG-CCCAGCA 1314
||||||| ||||||||||| ||||||||||||||||||| ||||||| || | |||||||
Sbjct 1432 AGATCTATACAAACTGCTTGCGCAGCCTAACAGGGATCAAGTGGTTA-CCCGACCCAGCA 1374
Query 1315 ATCTCTCACTTATTCCAGACAACAACCCGTTCAAGATAAGAAAAACCGATGAAATCAATC 1374
||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1373 ATCCCTCACTTATTCCGGACAACAACCCGTTCAAGATTAGAAAAACCGATGAAATCAATC 1314
Query 1375 TAGAATTTGCAGAGTACGGTTTGCAAGAACTCGCTGTTTCATTTGTGACCAAAAGCAAAG 1434
| ||| | ||||| |||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 1313 TGGAAATCGCAGAATACGGTGTGCAAGAACTCGCTGATTCGTTTGTGACCAAAAGCAAAG 1254
Query 1435 CAACGGACGTGGCTTCTTCTTCACCAAACTCTCACGGACACGAGGATCAAAAAGAGGGTG 1494
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1253 CAGTGGACGTGGCTTCTTCTTCACCAAACTCTCACGAACACGAGGATCAAAAAGAGTGTG 1194
Query 1495 TTACAATCGATTTGCCCAAGCTTGAAGATTCTGGAATCAAACAAGACTCTGCGAAGAACA 1554
||||||||||| || |||| ||||| | ||||||||||||| ||| || ||||||||
Sbjct 1193 TTACAATCGATCTGTCCAAACTTGATGCCGCTGGAATCAAACAGGACAGTGAGAAGAACA 1134
Query 1555 CAGTGAAAGAAACATTTGAAACAACAGAGGTAGATATAGCTGAAGTTCAAGATCATGTGA 1614
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1133 GAGTGAAAGAAACATTTGAAACAACAGAAGTAGATCTAGCTGAAGTTCAAGATCATGTGA 1074
Query 1615 ACATGACGACAAAGAGAGTGCGTGGAGCAAAACCTAGAACCGAGAGTTTCAAAGTGAAAA 1674
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1073 ACATGACGACAAAGAGAGTGCGTGGAACAAAACCTAGAACCGAGAATTTCAAAGTGAAAA 1014
Query 1675 CAAGCTGTAAAAATTCAGAGAACAAGAAGACTACAATCAAGAAAAAACACAGTATATTAG 1734
|||||||||||| |||||||||||| ||||||| ||||||||| ||||||||||||||||
Sbjct 1013 CAAGCTGTAAAAGTTCAGAGAACAACAAGACTATAATCAAGAAGAAACACAGTATATTAG 954
Query 1735 ATTTCTTCCATCGATTGTAATCTCTTTAATTTTGGTATGT 1774
|||||||||| |||||||||||||||||||||||||||||
Sbjct 953 ATTTCTTCCAGCGATTGTAATCTCTTTAATTTTGGTATGT 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87750552660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5