BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920737

Length=814
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18120.1 | Symbols:  | pseudogene, putative myrosinase-assoc...   283    2e-75


> AT1G18120.1 | Symbols:  | pseudogene, putative myrosinase-associated 
protein, blastp match of 46% identity and 1.7e-57 P-value 
to GP|6522943|emb|CAB62165.1||AJ223307 myrosinase-associated 
protein {Brassica napus} | chr1:6232092-6233926 FORWARD 
LENGTH=1835
Length=1835

 Score =  283 bits (153),  Expect = 2e-75
 Identities = 177/188 (94%), Gaps = 4/188 (2%)
 Strand=Plus/Plus

Query  345   TTGTTACACTCTTTAAAAGCGAGTAAATTCGCGATTCAATTGCTAGCACCATTGGGTTGC  404
             ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct  1430  TTGTTACACTCTTTAAAAGCGAGTAAATTCGCGATTCAATTGCTAGCTCG-TTGGGTTGC  1488

Query  405   TTACCAATATCGAGGCAAGAATACAAAACAGG-CAACGAGTGTTACGAGCCACTCAACGA  463
             |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  1489  TTACCAATATCGAGACAAGAATACAAGACAGGGCAACGAGTGTTACGAGCCACTCAACGA  1548

Query  464   TTTAGTCAAACAACACAACGAGAAGATTGGTCCAATGTTGCACGACCTTGCaaaaaaaaa  523
             |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||
Sbjct  1549  TTTAGTCAAACAACACAACGAGAAGATTGGTCCAATGTTGAACGACCTTGCTAAAACAAA  1608

Query  524   aCTCCCGG  531
               ||||||
Sbjct  1609  --TCCCGG  1614


 Score =  189 bits (102),  Expect = 4e-47
 Identities = 122/131 (93%), Gaps = 4/131 (3%)
 Strand=Plus/Plus

Query  132  ATGACACTAAATCAGCAAGT-GAAT-ATATTTAGAAGTATAAAATCAAATTGGACCGACG  189
            |||||||||||||||||||| | || || ||||||||||| ||||||||||||| |||||
Sbjct  673  ATGACACTAAATCAGCAAGTCG-ATAAT-TTTAGAAGTATGAAATCAAATTGGATCGACG  730

Query  190  ATTTCATTGGAAGGTCACTGTTTATGATTTACATTGGTACCGAAGATTACTTAAACTTTA  249
            ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  731  ATTTCATTGGAAGGTCACTGTTTATGATTTACATTGGTACCGAAGATAAATTAAACTTTA  790

Query  250  CTAAGAACAAA  260
            | |||||||||
Sbjct  791  CCAAGAACAAA  801


 Score =  182 bits (98),  Expect = 6e-45
 Identities = 121/132 (92%), Gaps = 2/132 (2%)
 Strand=Plus/Plus

Query  1    TCCATGATAAAGCTGAATTCATGGGCATTCCTAAAGAGATCCCACCAGTACTTAAAACAG  60
            |||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||
Sbjct  459  TCCATGATAAAGCTGAATTCATGGGCATTCCGGAAGAGATCCCACCAGTATTTAAAACAG  518

Query  61   GCGTTGATGTTTCACGTGGAGCCAGTTTTG-CGGTCGCCGATACTTCTATTCTTGGCAAT  119
             ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||| ||
Sbjct  519  CCGTTGATGTTTTACGTGGAGCCAGTTTTGGCG-TCGCCGATGCTTCTATTCTTGGCTAT  577

Query  120  TCGGAAACATCC  131
             ||| |||||||
Sbjct  578  CCGGCAACATCC  589


 Score = 80.5 bits (43),  Expect = 2e-14
 Identities = 48/50 (96%), Gaps = 2/50 (4%)
 Strand=Plus/Plus

Query  296  GCAAGCATTTGTCATTTCCGCTATTAATCAATTGAAGATC-GACATCAAC  344
            ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  811  GCAAGCATTTGTCATTTCCGCTATTAATCAATTGAAG-TCCGACATCAAC  859



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39634741983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5