BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920737 Length=814 Score E Sequences producing significant alignments: (Bits) Value AT1G18120.1 | Symbols: | pseudogene, putative myrosinase-assoc... 283 2e-75 > AT1G18120.1 | Symbols: | pseudogene, putative myrosinase-associated protein, blastp match of 46% identity and 1.7e-57 P-value to GP|6522943|emb|CAB62165.1||AJ223307 myrosinase-associated protein {Brassica napus} | chr1:6232092-6233926 FORWARD LENGTH=1835 Length=1835 Score = 283 bits (153), Expect = 2e-75 Identities = 177/188 (94%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 345 TTGTTACACTCTTTAAAAGCGAGTAAATTCGCGATTCAATTGCTAGCACCATTGGGTTGC 404 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1430 TTGTTACACTCTTTAAAAGCGAGTAAATTCGCGATTCAATTGCTAGCTCG-TTGGGTTGC 1488 Query 405 TTACCAATATCGAGGCAAGAATACAAAACAGG-CAACGAGTGTTACGAGCCACTCAACGA 463 |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1489 TTACCAATATCGAGACAAGAATACAAGACAGGGCAACGAGTGTTACGAGCCACTCAACGA 1548 Query 464 TTTAGTCAAACAACACAACGAGAAGATTGGTCCAATGTTGCACGACCTTGCaaaaaaaaa 523 |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| Sbjct 1549 TTTAGTCAAACAACACAACGAGAAGATTGGTCCAATGTTGAACGACCTTGCTAAAACAAA 1608 Query 524 aCTCCCGG 531 |||||| Sbjct 1609 --TCCCGG 1614 Score = 189 bits (102), Expect = 4e-47 Identities = 122/131 (93%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 132 ATGACACTAAATCAGCAAGT-GAAT-ATATTTAGAAGTATAAAATCAAATTGGACCGACG 189 |||||||||||||||||||| | || || ||||||||||| ||||||||||||| ||||| Sbjct 673 ATGACACTAAATCAGCAAGTCG-ATAAT-TTTAGAAGTATGAAATCAAATTGGATCGACG 730 Query 190 ATTTCATTGGAAGGTCACTGTTTATGATTTACATTGGTACCGAAGATTACTTAAACTTTA 249 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 731 ATTTCATTGGAAGGTCACTGTTTATGATTTACATTGGTACCGAAGATAAATTAAACTTTA 790 Query 250 CTAAGAACAAA 260 | ||||||||| Sbjct 791 CCAAGAACAAA 801 Score = 182 bits (98), Expect = 6e-45 Identities = 121/132 (92%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 1 TCCATGATAAAGCTGAATTCATGGGCATTCCTAAAGAGATCCCACCAGTACTTAAAACAG 60 ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 459 TCCATGATAAAGCTGAATTCATGGGCATTCCGGAAGAGATCCCACCAGTATTTAAAACAG 518 Query 61 GCGTTGATGTTTCACGTGGAGCCAGTTTTG-CGGTCGCCGATACTTCTATTCTTGGCAAT 119 ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||| || Sbjct 519 CCGTTGATGTTTTACGTGGAGCCAGTTTTGGCG-TCGCCGATGCTTCTATTCTTGGCTAT 577 Query 120 TCGGAAACATCC 131 ||| ||||||| Sbjct 578 CCGGCAACATCC 589 Score = 80.5 bits (43), Expect = 2e-14 Identities = 48/50 (96%), Gaps = 2/50 (4%) Strand=Plus/Plus Query 296 GCAAGCATTTGTCATTTCCGCTATTAATCAATTGAAGATC-GACATCAAC 344 ||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 811 GCAAGCATTTGTCATTTCCGCTATTAATCAATTGAAG-TCCGACATCAAC 859 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39634741983 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5