BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920738
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26830.1 | Symbols: | Threonyl-tRNA synthetase | chr5:94372... 1003 0.0
AT1G18130.1 | Symbols: | Class II aaRS and biotin synthetases ... 708 0.0
AT1G17960.1 | Symbols: | Threonyl-tRNA synthetase | chr1:61808... 669 0.0
> AT5G26830.1 | Symbols: | Threonyl-tRNA synthetase | chr5:9437297-9441779
FORWARD LENGTH=2395
Length=2395
Score = 1003 bits (543), Expect = 0.0
Identities = 1187/1484 (80%), Gaps = 99/1484 (7%)
Strand=Plus/Plus
Query 372 AGGAAGGACAACCATTTGAAAGGATTCTAGTGACCAAAGATCAGGCTCTTGAGATGTTTT 431
|||||| ||||||||||||||||||| |||||| || |||||||| || ||||||||||
Sbjct 668 AGGAAGCACAACCATTTGAAAGGATTGAAGTGACGAAGGATCAGGCACTCGAGATGTTTT 727
Query 432 CTGATAATTTA-TTTAAGGTTGAAATTATCAATGACAACTTGGCTGAAGACGA-GACCAC 489
|||| || | | |||||||||||| | ||||||| ||| ||| |||| | |||||
Sbjct 728 CTGAGAA-TAATTTTAAGGTTGAACTCATCAATG---GTTTGCCTGCAGAC-ATGACCAT 782
Query 490 TACAGTCTACAGATGTGGCCCATTGGTTGATCTGTGTCGTGGACCACATATACCAAATAC 549
||| ||||||||||||||||| ||||| ||| ||||||||||||| || |||||||||||
Sbjct 783 TACTGTCTACAGATGTGGCCCTTTGGTGGATTTGTGTCGTGGACCGCACATACCAAATAC 842
Query 550 TTCCTTTGTGAAAGCTTTCAAGTGTTTGAAGGCTTCATCCGCATACTGGAAAGGTGACAA 609
||||||||||||||| ||||||||||||| ||| ||||| || |||||||| ||||||||
Sbjct 843 TTCCTTTGTGAAAGCGTTCAAGTGTTTGAGGGCCTCATCAGCTTACTGGAAGGGTGACAA 902
Query 610 AGACCGCGAAAGCTTGCAGAGAGTGTATGGGATATCTTATCCGGATGATAAGCAACTCAA 669
|||||| || |||||||||||||| ||||||||||||||||| ||| | ||||| || ||
Sbjct 903 AGACCGTGAGAGCTTGCAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGCAGCTGAA 962
Query 670 GGACTATCT-TAAGTCTATAGAAGAAGCCAAGATA-TATGACCACAGACTCTCGGGCCAA 727
| | ||||| || | | ||||||||||||| | | |||||||||||||| | |||||||
Sbjct 963 GAAATATCTCCAA-TTTCTAGAAGAAGCCAA-AAAGTATGACCACAGACTATTGGGCCAA 1020
Query 728 CAGCAGGAACTTTTCTTTTCTCACCCACTCAGTCCTGGAAATTGTATCTACCTCCCACAT 787
|||||||||| |||||| ||| | |||||| ||||| | || | ||| ||| |||| |
Sbjct 1021 AAGCAGGAACTCTTCTTTAGTCATCAACTCAGCCCTGGGAGTTATTTCTTCCTTCCAC-T 1079
Query 788 -GGCACTCGCGTCTATAACAAGTTGATGGAATTC-TTCAAGAAAGAATATTGGAAAATGG 845
|||||||| || ||||||| ||||||||| ||| || ||||| |||| ||| | | ||
Sbjct 1080 CGGCACTCGTGTATATAACAGGTTGATGGACTTCATT-AAGAACCAATACTGGCACAGGG 1138
Query 846 GTTACACTGAGGTCATTACACCAGTTATTTACACCATGGATTTCTGGGAAACATCAAGAC 905
||||||| ||||| ||||||||| ||| |||| |||||| || ||| ||||||| |||
Sbjct 1139 GTTACACAGAGGTTATTACACCAAATATGTACAACATGGAGTTGTGGCAAACATCCGGAC 1198
Query 906 ATGCTGA-ATACTACCAGAAAAATATGTTCAAGTTAGATTTTCAAACACCCGGATTGACT 964
||||||| | | ||| || | |||||| | ||| ||| | | |||||
Sbjct 1199 ATGCTGACA-ATTACAAGGATAATATG-T----TTA-CGTTT---A-A----TATTGA-- 1241
Query 965 GTCATA-CATA-ACTACGGGATCAAACATATGAATTG-CCAGGGTCACTGCTTGATGTTC 1021
| | | || | | | |||| |||||| ||||||||| || |||||||||||||| |||
Sbjct 1242 G--A-AGCA-AGAGTTCGGGCTCAAACCTATGAATTGTCC-TGGTCACTGCTTGATATTC 1296
Query 1022 CGA-CACA--G-T-G----T-T-CA-A-TTACCCATTAAACTGGCTGACTTTGGACCGTT 1068
| | || | | | | | | | | ||||| || | |||||| ||||||||| |||
Sbjct 1297 C-AGCATAGGGTTCGCTCATATAGAGAGTTACCTATGAGACTGGCCGACTTTGGAGTGTT 1355
Query 1069 GTATCAAAATGAGGCAAGTGAAG-ATCTTAGTGGGTTGACCCGTGTCCGACAGTTCCAAC 1127
| | ||||||||||||| || | |||||||| ||||| |||||||||| |||||| |
Sbjct 1356 ACACCGCAATGAGGCAAGTGGAGCA-CTTAGTGGATTGACTCGTGTCCGACGGTTCCAGC 1414
Query 1128 AGGATGATGCACACATATTCTGTAGCGA-G-ACGCAGGTTAAAGAAGAAGTG-AGAGGTA 1184
|||||||||||||||||||||||| | | | | |||||||| | ||||||| || |||
Sbjct 1415 AGGATGATGCACACATATTCTGTA-CAACGGAA-CAGGTTAAGGGAGAAGTGCAG-GGTG 1471
Query 1185 TATTGGATTTTGTTGACTATGCT-TACACAAAATTT-GGGTTTACCTATGAGCTAAAGCT 1242
| ||||| || ||||||| | | |||| || ||| |||||||||||||||||||| ||
Sbjct 1472 TGTTGGAGTTCATTGACTACG-TGTACA-AAGTTTTCGGGTTTACCTATGAGCTAAAACT 1529
Query 1243 TTCAACGAGGCCAAAGAAATACCTTGGAGATTTGGAAAAATGGGACAAAGCTGAGAAAG- 1301
||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| | |
Sbjct 1530 TTCAACGAGGCCAGAGAAGTACCTTGGAGATTTGGAAACATGGGATAAAGCTGA-AGCGG 1588
Query 1302 ATCTTGAAGAAGC-ACTA-AATGATTTTGGAAAGACATG-G-GTTAAAAACAAAGGAGAC 1357
|||| ||||||| | || || | |||||||||| ||| | ||| || | |||||||
Sbjct 1589 ATCTCAAAGAAGCTA-TAGAA-GCTTTTGGAAAGCCATTAGTGTTGAA--CGAAGGAGAT 1644
Query 1358 GGGGAATTTTATGGCCCAAAGATAGACATAACAGTGTATGATGCAATGAAAAGGAAATTC 1417
|| | ||||||||| |||||||||||||| ||||| | |||||||||||| |||||||||
Sbjct 1645 GGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTC 1704
Query 1418 CAGTGTGCTACTATACAGCTTGATTTTCACCTTCCTGAT-CGCTTCAAACT-GGAATATT 1475
|||||||||||| |||||||||||||||| ||||| ||| |||||||| || ||||||
Sbjct 1705 CAGTGTGCTACTTTACAGCTTGATTTTCAACTTCC-GATTCGCTTCAA-CTTGGAATACG 1762
Query 1476 CAGCTGAGGATGAAACGGAGATAGAG-AGTTCTGTGCTGATACATAGAGCGGTGTTGGGC 1534
|||||||||||||| || | | |||| || |||| ||||||||||||| ||||||||
Sbjct 1763 CAGCTGAGGATGAAGCGAAAA-AGAGTAGACCTGTAATGATACATAGAGCCGTGTTGGGA 1821
Query 1535 TCTGTTGAGCGTCTTTTTGCCATATTGTTGGAACAGTACAAAGGAAAATTGCCCTTCTGG 1594
||||| || ||| | ||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 1822 TCTGTGGAACGTATGTTTGCCATATTGTTGGAGCATTACAAAGGAAAATGGCCCTTCTGG 1881
Query 1595 CTTAGTCCCCGCCAGGCCATAGTTTGCTC-TGTTTCAGAGGATTCTC-GTTCCTACGCA- 1651
||||||| || |||||||||||||| || | | |||||| | |||| | || |||
Sbjct 1882 ATTAGTCCGCGACAGGCCATAGTTTG-TCCTATATCAGAGAAATCTCAGCAA-TATGCAG 1939
Query 1652 AACAAGGTG-AGAGATCGAATTCACGAAGCTGGCTACTATGTTGATGTTGACACAACAGA 1710
|| ||||| | | | | |||| | || ||||| | ||||||||||| |||| ||||||
Sbjct 1940 AA-AAGGTTCAAA-AGCAAATTAAAGATGCTGGGTTCTATGTTGATGCTGACTTAACAGA 1997
Query 1711 TAGAACCG-TCAG-TGAGAAGGTGCAAGAAGCTCAGGTTGCACAGTACAACTACATTCTG 1768
|||| | | || | | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 1998 CAGAAA-GAT-AGATAAAAAGGTGCGAGAAGCTCAGCTTGCTCAGTACAACTACATTCTG 2055
Query 1769 GTCGTGGGTGATGA-AGAGGCTAGA-ACGGGACAGGTGACTGTT 1810
||||||||||| | ||| ||| | || |||||||||| ||||
Sbjct 2056 GTCGTGGGTGAA-ACAGAAGCT-GCTACAGGACAGGTGAGTGTT 2097
> AT1G18130.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr1:6235895-6238799 FORWARD LENGTH=498
Length=498
Score = 708 bits (383), Expect = 0.0
Identities = 428/450 (95%), Gaps = 2/450 (0%)
Strand=Plus/Plus
Query 1437 TTGATTTTCACCTTCCTGATCGCTTCAAACTGGAATATTCAGCTGAGGATGAAACGGA-G 1495
||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| | |
Sbjct 50 TTGATTTTCACCTTCGTGATCGCTTCAAACTAGAATATTCAGCTGAGAATGAAAC-TATG 108
Query 1496 ATAGAGAGTTCTGTGCTGATACATAGAGCGGTGTTGGGCTCTGTTGAGCGTCTTTTTGCC 1555
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 109 ATAGAGAGATCTGTGCTGATACATAGAGCGGTGTTGAGCTCTGTTGAGCGTCTTTTTGCC 168
Query 1556 ATATTGTTGGAACAGTACAAAGGAAAATTGCCCTTCTGGCTTAGTCCCCGCCAGGCCATA 1615
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 169 ATATTGTTGGAACAGTACAAAGGAAAATTCCCCTTCTGGCTTAGTCCCCGCCAGGCCATA 228
Query 1616 GTTTGCTCTGTTTCAGAGGATTCTCGTTCCTACGCAAACAAGGTGAGAGATCGAATTCAC 1675
|||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 229 GTTTGCTCTGTTTCAGAGGATTATCGTTCCTACGCAGACAAGGTGAGAGATCAAATTCAC 288
Query 1676 GAAGCTGGCTACTATGTTGATGTTGACACAACAGATAGAACCGTCAGTGAGAAGGTGCAA 1735
|||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||
Sbjct 289 GAAGCTGGCTACTATGTTGATGTTGACACAACGGATAGAAACGTCAGTGACAAGGTGCAA 348
Query 1736 GAAGCTCAGGTTGCACAGTACAACTACATTCTGGTCGTGGGTGATGAAGAGGCTAGAACG 1795
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 349 GAAGCTCAGGTTGCACACTACAACTACATACTAGTCGTGGGTGATGAAGAGGCTAGAACG 408
Query 1796 GGACAGGTGACTGTTTGGCTAAGAGACGAAATGATGAGCATCGAGACTCTGTTGGATGAA 1855
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 409 GGACAGGTGACTGTTTGGCTTAGAGACGAAATGATGAGCATCGAGACTCTGTCGGATGAA 468
Query 1856 TTCAAGTTGAAGACGGCCAACTTTCTCTGA 1885
||||| |||||||||||||||||||| |||
Sbjct 469 TTCAAATTGAAGACGGCCAACTTTCTTTGA 498
> AT1G17960.1 | Symbols: | Threonyl-tRNA synthetase | chr1:6180896-6183806
REVERSE LENGTH=1565
Length=1565
Score = 669 bits (362), Expect = 0.0
Identities = 666/807 (83%), Gaps = 43/807 (5%)
Strand=Plus/Plus
Query 1035 AATTACCCATTA-AACTGGCTGACTTTGGACCGTTGTATCAAAATGAGGCA-AGTGAAG- 1091
|||||||||||| || |||| || |||||| ||| | | |||||||| | |||| ||
Sbjct 575 AATTACCCATTAGAA-TGGCCGAATTTGGAGTGTTACACCGAAATGAGG-ACAGTGGAGC 632
Query 1092 ATCTTAGTGGGTTGACCCGTGTCCGACAGTTCCAACAGGATGATGCACACATATTCTGTA 1151
| ||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 633 A-CTTGGTGGAATGACCCGTGTCCGACGGTTTGTACAGGATGATGCACACATATTCTGTA 691
Query 1152 GCG-AGACGCAGGTTAAAGAAGAAGTG-AGAGGTATATTGGATTTTGTTGACTATGCTTA 1209
| | || |||||| | ||||||||| || ||| | |||||||| ||||||||| |||
Sbjct 692 GAGTGGA-TCAGGTTGAGGAAGAAGTGAAG-GGTGTGTTGGATTTCATTGACTATGTTTA 749
Query 1210 CACAAAATTTGGGTTTACCTATGAGCTAAAGCTTTCAACGAGGCCAAAGAAAT-ACCTTG 1268
|| || |||||||||||||||||| |||| ||||||||||||||||||| || || |||
Sbjct 750 CAGAATATTTGGGTTTACCTATGAACTAACGCTTTCAACGAGGCCAAAG-GATCACATTG 808
Query 1269 GAGATTTGGAAAAATGGGAC-AAAGCTGAGAAA-GATCTTGAAGAAGCACTAAATGATTT 1326
|||||||||||| ||||| | |||||||| ||| ||||||||| |||| ||| |||||||
Sbjct 809 GAGATTTGGAAACATGGG-CTAAAGCTGA-AAATGATCTTGAAAAAGCTCTAGATGATTT 866
Query 1327 TGGAAAGACATGGGTTAAAAACAAAGGAGACGGGGAATTTTATGGCCCAAAGATAGACAT 1386
||||||| ||||||||| ||| |||||||||| | ||||||||||||||||||||||||
Sbjct 867 TGGAAAGCCATGGGTTATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACAT 926
Query 1387 AACAGTGTATGATGCAATGAAAAGGAAATTCCAGTGTGCTACTATACAGCTTGATTTTCA 1446
|||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 927 AACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGCTTGATTTTCA 986
Query 1447 CCTTCCTGATCGCTTCAAACTGGAATAT-TCAGCTGAGGATGAAACGGAGATAGAGAGTT 1505
||||| | | ||||||||||| |||| | || ||| | ||||| | || ||| |
Sbjct 987 ACTTCCGGCTTGCTTCAAACTGAAATACCTAAG-TGAAAA--AAACGAA-ATGGAG-GCA 1041
Query 1506 C-TGTGCTGATACATAGAGCGGTGTTGGGCTCTGTTGAGCGTCTTTTTGCCATATTGTTG 1564
| |||| |||||||||| ||||||||||| ||| |||||||| | |||||||||||||||
Sbjct 1042 CCTGTGATGATACATAGTGCGGTGTTGGGATCTATTGAGCGTATGTTTGCCATATTGTTG 1101
Query 1565 GAACAGTACAAAGGAAAATTG-CCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTC 1623
||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GAACATTACAAAGGAAT-TTGGCCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTC 1160
Query 1624 TGTTTCAGAGGATTCTCGTTCCTACGC-AAACAAGGTG-AGAGATC-GAATTCACGAAG- 1679
| |||||||||||| | ||||||| || ||||| ||| | | | | || || | ||||
Sbjct 1161 TCTTTCAGAGGATTGTAGTTCCTATGCCAAACA-GGTACAAAAA-CAGA-TTAATGAAGT 1217
Query 1680 CTGGCTACTATGTTGATGTTGAC-ACAACAGATAGAA-CCGTCAGTGAGAAGGTG-CAAG 1736
| || |||||||||||| |||| | || || |||| || || || | |||||| || |
Sbjct 1218 CGGG-TACTATGTTGATATTGATGA-AAGTGACAGAAGCC-TCCGTAAAAAGGTGGCA-G 1273
Query 1737 AAGCTCAGGTTGCAC-AGTACAACTACATTCTGGTCGTGGGTGATGAAGAGGCTAG-AAC 1794
| |||| || ||||| | ||||||||||| |||||||| ||| | |||||| | | |||
Sbjct 1274 ATGCTCGGGATGCACCA-TACAACTACATACTGGTCGTAGGTCAAAAAGAGGTT-GCAAC 1331
Query 1795 GGGACAGGTGACTGTTTGGCTAAGAGA 1821
||||||||||| ||| |||| |||||
Sbjct 1332 TGGACAGGTGACAGTTCGGCTCAGAGA 1358
Score = 348 bits (188), Expect = 1e-94
Identities = 234/257 (91%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 1 GGTTGATCATGTCCTGCGGGACATGAATAGGCCCCTGGAAGGTGATTGTTCGGTAGAGAT 60
|||| |||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 315 GGTTAATCATGTCTTGTGGGACATGAATAGGCCCCTGGAAGGTGATTGTTCCTTAGAGAT 374
Query 61 TTTCGGATTTGATAGCGTCCAAGGCCGTGATACTTTCTGGCATTCTAGTGCTCACATTCT 120
|||||||||||| |||| |||||||||| ||||||||||||||||||| || ||||||||
Sbjct 375 TTTCGGATTTGACAGCGACCAAGGCCGTAATACTTTCTGGCATTCTAGCGCCCACATTCT 434
Query 121 AGGCCAGGCTCTCGAGCAGGAGTATGGATGCAAGCTATGCATTGGACCCTGCAAAACCAT 180
||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 435 AGGCCAGGCTCTCGAGCAGGAGTATGGATGCAAGCTATGTATTGGACCCTGCGAACCCAG 494
Query 181 AGATGAGGGTTTCTATTACGATGCGTTTTATTATGGCGATCTGGGCTTAAACGACGATCA 240
|||||| || |||||||||||| | ||||||||||||| ||||| ||||||||| ||||
Sbjct 495 AGATGAAGGCTTCTATTACGATTCACTTTATTATGGCGAGCTGGGATTAAACGACAATCA 554
Query 241 TTTTCCACACATCGAAG 257
||||||| |||||||||
Sbjct 555 TTTTCCAAACATCGAAG 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94326824055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5