BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920739
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18140.1 | Symbols: LAC1, ATLAC1 | laccase 1 | chr1:6238844-... 2793 0.0
AT5G58910.1 | Symbols: LAC16 | laccase 16 | chr5:23789522-23791... 65.8 1e-09
> AT1G18140.1 | Symbols: LAC1, ATLAC1 | laccase 1 | chr1:6238844-6241436
REVERSE LENGTH=1931
Length=1931
Score = 2793 bits (1512), Expect = 0.0
Identities = 1692/1781 (95%), Gaps = 4/1781 (0%)
Strand=Plus/Plus
Query 8 TTCTATAAAGCAAATGGAGAATTTAGGGTTTCTAATAATTTCGACCTTTTTGCTTATATT 67
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 32 TTCTATAAAG-AAATGGAAAATTTAGGGTTTCTAATAATTTCGACCTTTTTGCTTCTATT 90
Query 68 TGCAACTCTTCTCCCTTATCCTTCCGCTTCAACCACCCGTCGATTTCACTTTAATGTCGA 127
| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 91 TACAACTCTTCTCCCTTATTCTTCGGCTTCAACCACTCGTCGATTTCACTTTAATGTCGA 150
Query 128 ATGGAAGAAGGTAACTCGATTGTGCCACACGAAACAGCTTTTAACGGTGAACGGACAATA 187
|||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 151 ATGGAAGAAGGTAACTCGATTGTGCCACACCAAACAACTTCTAACGGTGAACGGACAATA 210
Query 188 TCCAGGGCCGACCGTGGCAGTACACGAAGGTGACACCGTAGAAATCAAAGTGACTAACCG 247
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 211 TCCAGGACCGACCGTGGCAGTACACGAAGGTGACATCGTAGAAATCAAAGTGACTAACCG 270
Query 248 GATTGCTCAAAATACAACTATTCATTGGCATGGGTTAAGGCAATACCGAACCGGTTGGGC 307
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 271 GATTGCTCACAATACAACTATTCATTGGCATGGGTTAAGGCAATACCGGACCGGTTGGGC 330
Query 308 TGATGGACCGGCTTACATAACACAATGTCCAATAAGATCAAAACAATCATATACATATAG 367
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 331 TGATGGACCGGCTTACATAACGCAATGTCCGATAAGATCGAAACAATCATATACATATAG 390
Query 368 ATTCAAAGTGGAAGATCAAAGAGGCACACTCCTTTGGCATGCTCATCACTCATGGCAACG 427
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 ATTCAAAGTGGAGGATCAAAGAGGCACACTCCTTTGGCATGCTCATCACTCATGGCAACG 450
Query 428 AGCCTCCGTCTATGGCGCTTTCATCATCTATCCGCGGCAGCCTTATCCCTTTTCCGGCAG 487
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 AGCCTCCGTCTACGGCGCTTTCATCATCTATCCGCGGCAGCCTTATCCCTTTTCCGGCAG 510
Query 488 TAATATCCAATCAGAAATCCCCATTATACTTGGTGAATGGTGGAATGATGACGTGGAC-A 546
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 511 CCATATCCAATCCGAAATTCCCATTATACTTGGTGAATGGTGGAATGATGACGTGGACAA 570
Query 547 TGGTTGAGAAAGAGATGATGAAGACCGGAGCTGGGGCTAACGTTTCCGACGCTTACACCC 606
| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 571 T-GTTGAGAAAGCGATGATGAAGACCGGAGCTGGGGCTAAAGTTTCCGACGCTTACACCC 629
Query 607 TTAACGGGCTTCCCGGCCCACTTTATCCTTGTTCTACCAAAGATACTTTCACGGCGACCG 666
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 630 TTAACGGGCTTCCCGGCCCACTTTATCCATGTTCTACCAAAGATACTTTCACGGCGACCG 689
Query 667 TAGACGCCGGGAAAACCTACATCCTCCGTGTAATCAACGCAGCTCTAAACAACGAGCTCT 726
|||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 690 TAGACGCCGGAAAAACCTACATCCTCCGCATAATCAATGCAGCTCTAAACAACGAGCTCT 749
Query 727 TCTTGGCTGTAGCGAATCACACACTAACCGTAGTCGAGGTCGACGCGGTTTACACCAAAC 786
|| | ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 750 TCGTCGCTGTAGCGAATCACACGCTAACTGTAGTCGAAGTCGACGCGGTTTACACCAAAC 809
Query 787 CGGTTCATACCAAAGCAATCATGATCGCTCCAGGTCAAACCACCACCTTTCTTCTCCGCG 846
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 810 CGGTTCATACCAAAGCAATCATGATCGCTCCCGGTCAAACCACCACCCTTCTTCTCCGCG 869
Query 847 CCGACCAACTCTCCGGCGGCGAATTTATCATCGCCGCAACTCCTTACGTCACTTCCGTCT 906
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 870 CCGACCAACTCTCCGGCGGTGAATTTCTCATCGCCGCAACTCCTTACGTCACTTCCGTCT 929
Query 907 TCCCCTTCAACAACTCAACTGCCTTCGGATTCCTCCGATACAGCGGCAGAAGCAAACCGG 966
| || |||||||||||||| || | |||||| |||| |||| ||| | || ||||||||
Sbjct 930 TTCCTTTCAACAACTCAACCACCGTAGGATTCATCCGTTACACCGGTAAAACCAAACCGG 989
Query 967 AAAATTCCGAAAATACACGGCGGAGACGGCGATTAACGGCAATGTCGACAGTCGCAGCTC 1026
||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 990 AAAATTCCGTAAACACACGGCGGAGACGGCGATTAACGGCAATGTCGACAGTCGTAGCTC 1049
Query 1027 TTCCGAATATGCTGGATACGAAATTCGCGACGAAATTCTCCGATAGCATCAAGAGTCTCG 1086
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1050 TCCCGAATATGCTGGATACGAAATTCGCGACGAAATTCTCCGATAGCATCAAAAGTCTGG 1109
Query 1087 GATCAGCGGAGTATCCATGTAAAGTCCCGACGAAGATCGACAAGCGAGTGATCACCACGA 1146
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1110 GATCAGCGAAGTATCCATGTAAAGTCCCGACGAAGATAGACAAGCGAGTGATCACCACGA 1169
Query 1147 TAAGTCTCAATCTCCAGGATTGTCCGCCAAATCAGACCTGCGACGGCTACGCCGGGAAGA 1206
|||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct 1170 TAAGTCTCAATCTCCAGGATTGTCCGTTAAATCAGACCTGCGACGGTTACGCAGGGAAGA 1229
Query 1207 GATTCTTCGCATCAATGAACAACATCTCATTCGTCAGACCTCCGATGTCGATCCTCGAGA 1266
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1230 GATTCTTCGCATCAATGAACAACATCTCATTTGTCAGACCTCCGATATCGATCCTCGAAA 1289
Query 1267 GCTACTATAAGAAACAGAGTAAAGGAGTTTTCTCGCTCGATTTCCCAGAGAAACCACCGA 1326
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1290 GCTACTATAAGAAACAGAGCAAAGGAGTTTTCTCACTCGATTTCCCAGAGAAACCACCGA 1349
Query 1327 ACAGATTCGATTTCACGGGAGTAGATCCGGTATCGGAAAACATGAACACCGAATTCGGGA 1386
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1350 ACAGATTCGATTTCACGGGAGTAGATCCGGTATCGGAAAACATGAACACAGAATTCGGTA 1409
Query 1387 CGAAGCTATTCGAAGTCGAATTCGGATCGAGATTAGAGATCGTGTTTCAAGGAACGAGTT 1446
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1410 CGAAGCTTTTCGAAGTCGAATTCGGATCGAGATTAGAGATCGTGTTTCAGGGAACGAGTT 1469
Query 1447 TCTTAAACATTGAGAACCATCCGTTACATGTACACGGACACAATTTCTTCGTAGTGGGAA 1506
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1470 TCTTAAACATCGAGAATCATCCTTTACATGTACACGGACACAATTTCTTCGTAGTGGGAA 1529
Query 1507 GAGGATTTGGGAATTTTGACCCGGAGATGGATCCGAAAAGGTACAACTTGGTGGATCCGC 1566
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1530 GAGGATTTGGGAATTTTGACCCGGAGAAGGATCCGAAAAGGTACAACTTGGTGGATCCGC 1589
Query 1567 CGGAGAGGAACACCTTTGCGGTGCCGACGGGAGGATGGGCGGCGATTAGGATAAATGCGG 1626
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 CGGAGAGGAATACTTTTGCAGTGCCGACGGGAGGATGGGCGGCGATTAGGATAAATGCGG 1649
Query 1627 ATAATCCAGGAGTTTGGTTTATTCACTGTCATCTAGAACAACATACTTCTTGGGGATTAG 1686
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1650 ATAATCCAGGAGTTTGGTTTATTCACTGTCATCTAGAACAACATACTTCGTGGGGTTTAG 1709
Query 1687 CTATGGGGTTTATCGTTAAAGATGGACCTCTTCCTTCACAAACTCTGCTTCGTCCTCCTC 1746
| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1710 CAATGGGGTTTATCGTCAAAGATGGACCTCTTCCTTCACAAACTCTGCTTCCTCCTCCTC 1769
Query 1747 ATGATCTTCCTCAGTGTTAAAAA-TGTGTTTTATTATTATT 1786
||||||||||||||||||||||| ||| || ||||||||||
Sbjct 1770 ATGATCTTCCTCAGTGTTAAAAAATGTCTTCTATTATTATT 1810
> AT5G58910.1 | Symbols: LAC16 | laccase 16 | chr5:23789522-23791681
REVERSE LENGTH=1572
Length=1572
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 300 GGTTGGGCTGATGGACCGGCTTACATAACACAATGTCC 337
|||||||| |||||||||||||||||||||||||||||
Sbjct 151 GGTTGGGCAGATGGACCGGCTTACATAACACAATGTCC 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88352959200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5