BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920743
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18170.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 1129 0.0
> AT1G18170.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr1:6254229-6255690 FORWARD LENGTH=989
Length=989
Score = 1129 bits (611), Expect = 0.0
Identities = 722/773 (93%), Gaps = 18/773 (2%)
Strand=Plus/Plus
Query 4 TAATTAGAGCCCTGAAAATGGCGAATTTATTCACTGCTACGGCTCCTTTCCTCTCACTTT 63
||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 47 TAATTAGAG-CCTGAAAATGGCGAATCTGTTCACTGCTACGGCTCCTTTCCTCTCACTCT 105
Query 64 CAAAGCCATTCACCAAAACGGCACCGTACCACCACTGTTACGCCTCTTCTTCCAATCCGC 123
| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 106 CGAAGCCATTCACCAAAACGGCATCGTACCACCAGTGTTACGCCTCTTCTTCCAATCCGC 165
Query 124 CGGAGCCTGAGTCGtcttcttcttcttcttcttctccttctcctcctcctccA-C-CT-- 179
|||||||||| ||||||||| || || || ||||| | ||||| |||| | | ||
Sbjct 166 CGGAGCCTGA---GTCTTCTTC-TC--CTCCTCCTCCTCCGCCTCCGCCTCAACCGCTGG 219
Query 180 CAACCGCAACAGAAGAGGAAGAAGAAGGTTGAGACGACGGATTGGGTCGCTTCTTCCCTG 239
| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 220 C-ATCGCAACAGAAGAGGAAGAAGAACGTTGAGACGACGGATTGGGTCGCTTCTTCCTTG 278
Query 240 ACCCGGCGGTTCGGAATCGGCGCGGGTCTTGCCTGGGCGGGCTTTCTGGCTTTCGGTGTA 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 ACCCGGCGGTTTGGAATCGGCGCGGGTCTTGCCTGGGCGGGCTTTCTGGCTTTCGGTGTA 338
Query 300 GTCTCCGAGCAGATCAAGACTCGGATTGAGGTTTCTCAGGAAGTAGCTAACACCAGAGAT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 ATCTCCGAGCAGATCAAGACTCGGATTGAGGTTTCTCAGGAAGTAGCTAACACCAGAGAT 398
Query 360 GTAGAAGAAGAGAAAGAGATTGTGTTGCCCAACGGCATAAGGTACTATGATCTACGGGTT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 399 GTAGAAGAAGAGAAAGAGATTGTGTTGCCCAACGGCATAAGGTACTATGATCAACGGGTT 458
Query 420 GGAGGAGGAGCGACGCCAAGGGCAGGAGACTTGGTAGTGATTGATCTAAAGGGGCAAGTT 479
||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 459 GGAGGAGGAGCAACACCAAGAGCAGGAGACTTGGTAGTGATTGATCTAAAGGGGCAAGTG 518
Query 480 CAAGGAACCGAACAAGTATTTGTGGACACATTTGGAAGCAAAGGCAAGAAGAA-A----- 533
|||||||||| ||||||||| ||||| |||||||||| ||||| ||||||||| |
Sbjct 519 CAAGGAACCGGACAAGTATTCGTGGATACATTTGGAACCAAAGACAAGAAGAAGATGAAG 578
Query 534 CCACTGGCCCTTGTGGTGGGTTCAAAACCATATAGCAAAGGATTATGTGAAGGCATAGAT 593
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CCATTGGCACTTGTGGTGGGTTCAAAACCATATAGCAAAGGATTATGTGAAGGCATAGAT 638
Query 594 TATGTACTAAGGTCCATGAAGGCTGGAGGTAAACGCAGAGTGATTGTTCCACCATCGTTA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TATGTACTAAGGTCCATGAAGGCTGGAGGTAAACGCAGAGTGATTGTTCCACCATCGTTA 698
Query 654 GGATTTGGTGAAGACGGTGCTGAATTGGAATCGGGTTTGCAGATTCCTCCCAATGCTTCG 713
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 699 GGATTTGGTGTAGACGGTGCTGAATTGGAATCGGGTTTGCAGATTCCTCCTAATGCTTCG 758
Query 714 TTGGAGTATATAGTTGAGATTGATAGAGTCTCAATTGCACCTGCTTGAGTTGT 766
||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 759 TTGGAATATATAGTTGAGATTGATAGAGTCTCAATTGCACCAGCTTGAGTTGT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5