BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920744
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18180.1 | Symbols: | Protein of unknown function (DUF1295)... 1570 0.0
> AT1G18180.1 | Symbols: | Protein of unknown function (DUF1295)
| chr1:6255830-6257900 FORWARD LENGTH=1154
Length=1154
Score = 1570 bits (850), Expect = 0.0
Identities = 919/952 (97%), Gaps = 5/952 (1%)
Strand=Plus/Plus
Query 6 TGATT-GCTGTAGAGAATGGTAAAAGTAATCGATTCCCATTACCTTGCCATCACCGCCAT 64
||||| || | |||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 58 TGATTGGCCGGAGAGAATGGTGAAAGTAATCGATTCCCATTACCTAGCCATCACCGCCAT 117
Query 65 TGTCACCGTGGGTTATCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCA 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGTCACCGTGGGTTATCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCA 177
Query 125 AGTTACGGACTTTGCCGGAAGTACTAATTTCGTGATACTTGCTGTATTGACTCTGGTTCT 184
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 178 AGTTACTGACTTTGCCGGAAGTACAAATTTCGTGATACTTGCTGTATTGACTCTGCTTCT 237
Query 185 CAAAGGGACATGGCATTATCGTCAGATAGTCTTGACTGTGCTAGTAGTCGTATGGGGACT 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAAAGGGACATGGCATTATCGTCAGATAGTCTTGACTGTGCTAGTAGTCGTATGGGGACT 297
Query 245 TCGTCTCGGACTGTTCCTCCTTATGAGGATCTTGCAATGGGGTGAAGATCGACGCTTTGA 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCGTCTGGGACTGTTCCTCCTTATGAGGATCTTGCAATGGGGTGAAGATCGACGCTTTGA 357
Query 305 TGAAATGCGTGGAAATATCGGGAAACTAGTAGTCTTTTGGATTTTTCAGGCCGTGTGGGT 364
||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGACATGCGTGAAAATATTGGGAAACTAGTAGTCTTTTGGATTTTTCAGGCCGTGTGGGT 417
Query 365 TTGGACTGTTAGTTTACCTGTTACCTTTGTTAATGCAAGCAACGGTGGAAGATTGTTTCA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTGGACTGTTAGTTTACCTGTTACCTTTGTTAATGCAAGCAACGGTGGAAGATTGTTTCA 477
Query 425 GCCCGCAGATGTTATAGGTTGGACAATGTGGGCTGCAGGGTTCTTGATTGAAGCTACAGC 484
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 GCCCGCAGATGTTATCGGTTGGACAATGTGGGTTGCAGGGTTCTTGATTGAAGCTACAGC 537
Query 485 TGATCAACAAAAGCTTTCATTCAAGAAGTGTCCAGAAAACAAAGGAAGATGGTGCGATGT 544
|||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct 538 TGATCAACAAAAGCTTTCGTTCAAGAAGTGTCCAGAAAACAAAGGAAAATGGTGTGATGT 597
Query 545 TGGTGTATGGAAGTATTCACGCCATCCAAACTACTTTGGTGAGATGTTACTCTGGTGGGG 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGGTGTATGGAAGTATTCACGCCATCCAAACTACTTTGGTGAGATGTTACTCTGGTGGGG 657
Query 605 CATATATGTGGCTTCATTGCCTGTGCTTAAAGGTGTCGAGTACCTTGTCATAATTGGACC 664
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 CTTATATGTGGCTTCATTGCCTGTGCTTAAAGGTCTCGAGTACCTTGTCATAATTGGACC 717
Query 665 AGTCTTTCTCACTTTGCTACTTTTCTTCGTTAGCGGCATACCATTACTCGAGGAATCTGC 724
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 AGTCTTTCTCACTTTGCTACTTCTCTTCGTTAGCGGCATACCATTACTCGAGGAATCTGC 777
Query 725 GGACAAAAAATATGGTAACTTGGGAGCTTATCGACACTACAAGAAGACAACTAGTCCTCT 784
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGACAAAAAGTATGGTAACTTGGGAGCTTATCGACACTACAAGAAGACAACTAGTCCTCT 837
Query 785 GATTCTGTTACCACGAGGAGTGTATGGGTACTTGCCAAAATGGTGCAAAACAGTCTTTCT 844
|||||| ||||| |||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct 838 GATTCTCTTACCGCGAGGAGTGTATGGGTACTTACCAATATGGTGCAAATCAGTCTTTCT 897
Query 845 TTTTGAGTTTCCATTGTACAGCCGTAATCTTCCTCAAGAGACTACAGCCTGGGATAGACG 904
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 898 CTTTGAGTTTCCATTGTACAGCCGTAATCTTCCTCAAGAGACTACAGCTTGGGATAGACG 957
Query 905 AAACTCGAAGAAGAGCCAGAGAAGTATTGACTGAGGGAGCGAGAGAAAGAGA 956
|||||||||||||||||||||||| |||||||||| || |||||||||||
Sbjct 958 AAACTCGAAGAAGAGCCAGAGAAGCATTGACTGAG--AG--AGAGAAAGAGA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5