BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920747
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18210.1 | Symbols: | Calcium-binding EF-hand family protei... 1066 0.0
> AT1G18210.1 | Symbols: | Calcium-binding EF-hand family protein
| chr1:6267969-6268828 REVERSE LENGTH=860
Length=860
Score = 1066 bits (577), Expect = 0.0
Identities = 670/712 (94%), Gaps = 18/712 (3%)
Strand=Plus/Plus
Query 1 TTTACCTTTAACaaaaaaaaaaTGGCAAGCGCAAATCCAGAAACCGCCAAACCCACGCCA 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 23 TTTACCTTTAACAAAAAAAAAATGGCAAGCGCGAATCCAGAAACCGCCAAACCCACGCCT 82
Query 61 GCATCGGTGGACATGGCTAATCCAGAGGAGCTTAAGAAAGTTTTCGACCAGTTTGATTCC 120
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 83 GCAACGGTGGACATGGCTAATCCAGAGGAGCTTAAGAAAGTTTTCGACCAGTTTGACTCC 142
Query 121 AACGGTGACGGCAAGATCTCAGTCCTCGAACTCGGCGGTGTGTTTAAGGCCATGGGGACT 180
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 143 AACGGCGACGGCAAGATCTCAGTCCTCGAACTCGGCGGTGTGTTTAAGGCTATGGGGACT 202
Query 181 TCCTACACGGAGACGGAACTCAACCGCGTTCTGGAAGAAGTCGATACAGATCGCGACGGT 240
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 203 TCCTACACAGAGACGGAACTCAACCGCGTGCTCGAAGAAGTCGATACAGATCGCGACGGT 262
Query 241 TACATCAACCTCAACGAGTTCTCAACTCTCTGCCGCTCGTCTTCCTCCGCGGCAGAGATC 300
|||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 263 TACATCAACCTCGACGAATTCTCAACTCTCTGTCGCTCGTCTTCCTCCGCCGCAGAGATC 322
Query 301 CGTGACGCTTTCGATCTCTACGATCAGGACAAAAACGGACTGATCTCCGCCGCTGAGCTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 323 CGTGACGCTTTCGATCTCTACGATCAGGACAAAAACGGACTGATCTCCGCCTCTGAGCTT 382
Query 361 CACCAGGTTCTTAATCGTCTCGGGATGTCTTGCTCTGTTGAAGACTGTACTCGTATGATC 420
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 CACCAGGTGCTTAACCGTCTCGGGATGTCTTGCTCTGTTGAAGACTGTACTCGTATGATC 442
Query 421 GGACCTGTGGATGCTGACGGTGATGGGAATGTCAATTTCGAAGAGTTTCAGAAGATGATG 480
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 443 GGACCTGTGGATGCTGACGGCGATGGGAATGTTAATTTCGAAGAGTTTCAGAAGATGATG 502
Query 481 ACGTCGTCTTCTCTCCTCAACAGCAATGGATCCGCCGCTCCT--TT-GACCTAAGGGGGT 537
|||||||||||||||||||||||||||||||||||||||||| || |||||| ||| ||
Sbjct 503 ACGTCGTCTTCTCTCCTCAACAGCAATGGATCCGCCGCTCCTCCTTCGACCTA-GGGAGT 561
Query 538 TTCCCAGATTCCAGATCTGGATTT-GGGAATAA---TAACTAAGGATTTTAGGT-CTTCT 592
|| ||||||| ||||||||||||| |||||||| |||||| ||| |||||| || ||
Sbjct 562 TTTCCAGATTTCAGATCTGGATTTCGGGAATAAGAATAACTATGGAAATTAGGTACT-CT 620
Query 593 TTTCT-CT-AAATGTGATCAATCATCACCATCAGTCTAACTTCAATCGGATCTCTTTTCA 650
||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 621 TTTCTTCTTAAATGTGATCAATCATCA---TCAGTCTAACTTCAATCGGATCTCTTTTCA 677
Query 651 TTCATACATGGTTGAGATTTAGATCTGAATATG-A-ATATATCGTT-GCTCT 699
||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 678 TTCATACATGGTTGAGATTTAGATCTGAATATGGATATATATCGTTTGCTCT 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34209454107
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5