BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920750
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18250.2 | Symbols: ATLP-1 | Pathogenesis-related thaumatin ... 1258 0.0
> AT1G18250.2 | Symbols: ATLP-1 | Pathogenesis-related thaumatin
superfamily protein | chr1:6276788-6278150 REVERSE LENGTH=1116
Length=1116
Score = 1258 bits (681), Expect = 0.0
Identities = 746/777 (96%), Gaps = 6/777 (1%)
Strand=Plus/Plus
Query 1 TGCTCAGTAGAGCT-CCATCAATGGCTTCAATCAAcctcttcctctttgctctccttctt 59
|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 125 TGCTCAGTAGAGCTCCCATCAATGGCTTCAATCAACCTCTTCCTCTTCGCTTTCCTTCTT 184
Query 60 ctcctctctcACGCTT---CAGCTTCAACGGTAATCTTCTACAACAAATGCAAACACCCA 116
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CTTCTCTCTCACGCTTCAGCAGCTTCAACGGTAATCTTCTACAACAAATGCAAACACCCA 244
Query 117 GTGTGGCCAGGAATTCAACCCAGCGCCGGCCAAAACTTACTCGCCGGCGGTGGTTTTAAG 176
|| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 245 GTTTGGCCAGGTATCCAACCCAGCGCCGGTCAAAACTTACTCGCCGGCGGTGGTTTTAAG 304
Query 177 C-TCTCGGCTAACAAAGCCCACTCTCTTCAACTCCCACCACTCTGGTCCGGCCGTTTCTG 235
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CTTC-CAGCTAACAAAGCCCACTCTCTTCAACTCCCACCACTCTGGTCCGGCCGTTTCTG 363
Query 236 GGGTCGCCACGGCTGCACCTTCGACAGATCTGGCCGTGGTCATTGCGCCACCGGAGATTG 295
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 364 GGGTCGCCACGGCTGCACCTTCGACAGATCTGGCCGTGGTCACTGCGCCACCGGAGATTG 423
Query 296 CGGCGGTTCTCTCTCCTGCAACGGTGCCGGAGGTGAACCTCCGGCCACTCTCGCCGAAAT 355
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 424 CGGCGGTTCTCTCTCCTGCAACGGTGCCGGCGGTGAACCTCCGGCCACTCTCGCCGAAAT 483
Query 356 CACTCTCGGCCCTGAGCTAGACTTCTATGACGTCAGCCTCGTCGATGGTTATAACCTGGC 415
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 484 CACTCTCGGCCCTGAGCTAGACTTCTATGACGTCAGCCTCGTCGACGGTTATAACCTGGC 543
Query 416 CATGTCGATTATGCCGGTTAAAGGTTCCGGTCAATGTAGCTACGCCGGTTGTGTAAGCGA 475
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 544 CATGTCGATTATGCCGGTTAAAGGTTCAGGTCAATGTAGCTACGCCGGTTGTGTTAGCGA 603
Query 476 TCTAAACCGGATGTGTCCGGTTGGGTTACAAGTCCGGTCACGTAACGGGAAACATGTAGT 535
|||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 604 TCTAAACCAGATGTGTCCGGTTGGTTTACAAGTCCGGTCACGTAACGGGAAACGTGTAGT 663
Query 536 AGCCTGTAAAAGTGCTTGCTCTGCCTTCAATTCACCACAGTACTGTTGCACCGGCTTGTT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AGCCTGTAAAAGTGCTTGCTCTGCCTTCAATTCACCACAGTACTGTTGCACCGGCTTGTT 723
Query 596 CGGTAACCCACAGTCTTGCAAACCAACGGCTTACTCCAAAATCTTCAAAGTCGCTTGCCC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 CGGTAACCCACAGTCTTGCAAACCAACGGCTTACTCCAAAATCTTCAAAGTCGCTTGCCC 783
Query 656 TAAAGCTTACTCATACGCTTACGATGACCCAACCAGCATCGCCACTTGTTCCAAGGCTAA 715
||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 784 AAAAGCTTACTCTTATGCTTACGACGACCCAACCAGTATCGCCACATGTTCCAAGGCTAA 843
Query 716 CTACATCGTCACCTTTTGCCCTCACCATCGCCATTAAATTAACCAGTAACGAAGAAG 772
|||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 844 CTACATCGTCACCTTTTGCCCTCATCATCGCCATTAAATTAGCCAGTAAAGAAGAAG 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37524907809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5