BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920785
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18520.1 | Symbols: TET11 | tetraspanin11 | chr1:6374932-637... 1367 0.0
> AT1G18520.1 | Symbols: TET11 | tetraspanin11 | chr1:6374932-6376316
FORWARD LENGTH=1073
Length=1073
Score = 1367 bits (740), Expect = 0.0
Identities = 820/859 (95%), Gaps = 3/859 (0%)
Strand=Plus/Plus
Query 1 GAGAAAGAAAAACTCCAAAAATGTTTCGAGTTAGCAATTTCGTGGTTGGTCTAGCCAACA 60
||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 100 GAGAAAGCAAATTTCCAAAAATGTTTCGAGTTAGCAATTTCATGGTTGGTCTAGCAAACA 159
Query 61 CATTGGTGATGTTAGTGGGCGCATCTGCCATTGGTTATTCGATTTACATGTTCGTTCACC 120
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 160 CATTGGTGATGTTAGTGGGCGCTTCGGCCATTGGTTATTCGATTTACATGTTCGTTCACC 219
Query 121 AAGGCGTCACCGATTGTGAATCTGCCATTCGGATACCACTTCTCACGACCGGGCTCATCC 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 220 AAGGCGTCACTGATTGTGAATCTGCCATTCGGATACCACTTCTCACGACCGGACTCATCC 279
Query 181 TCTTCTTGGTGTCGTTACTCGGAGTGATAGGATCTTGTTTCAAGGAAAATGTCGCAATGG 240
||||||||||||| || ||||||||||| ||||||||||||||||| ||| | |||||||
Sbjct 280 TCTTCTTGGTGTCTTTGCTCGGAGTGATTGGATCTTGTTTCAAGGAGAATTTGGCAATGG 339
Query 241 TTTCGTACTTGATCATATTGTTTTCGGGCATCGTTGCGTTGATGGTTTTCTCCATATTTC 300
|||| |||||||||||||||||| |||||| ||||| |||||| |||||||||||||||
Sbjct 340 TTTCCTACTTGATCATATTGTTTGGGGGCATTGTTGCATTGATGATTTTCTCCATATTTC 399
Query 301 TCTTCTTTGTGACTAACAAAGGAGCCGGTCGTGTGGTGTCCGGTCGAGGGTATAAAGAGT 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TCTTCTTTGTGACCAACAAAGGAGCCGGTCGTGTGGTGTCCGGTCGAGGGTATAAAGAGT 459
Query 361 ACCGGACGGTGGATTTCTCGACTTGGCTTAATGGGTTCGTTGGTGGGAAGAGATGGGTTG 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 460 ACCGGACGGTGGATTTCTCGACGTGGCTTAATGGGTTCGTTGGTGGGAAGAGATGGGTTG 519
Query 421 GGATAAGGTCTTGTTTGGCTGAGGCTAATGTTTGTGATGATTTGAGTGATGGTCGTGTTA 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 520 GGATAAGGTCTTGTTTGGCTGAGGCTAACGTTTGTGATGATTTGAGTGATGGTCGTGTTA 579
Query 481 GTCAGATCGCTGATGCGTTTTATCATAAGAACTTGTCTCCCATCCAGTCAGGTTGTTGTA 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 580 GTCAGATCGCTGATGCGTTTTATCACAAGAACTTGTCTCCCATCCAGTCAGGTTGTTGTA 639
Query 541 AGCCACCGTCAGATTGCAACTTCGAGTTCAGAAACGCGACGTTCTGGATACCACCGACCA 600
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 640 AGCCACCATCGGATTGCAACTTCGAGTTCAGAAACGCGACGTTCTGGATACCGCCGAGCA 699
Query 601 AAAACGAAACGGCGGTTGCAGCCGACAACGGGGACTGCGGTTCGTGGAGCAACGTGCAAA 660
||||||||||||| ||||| | || ||||||||||| ||| ||||||||||||||||||
Sbjct 700 AAAACGAAACGGCAGTTGC-G--GAAAACGGGGACTGTGGTACGTGGAGCAACGTGCAAA 756
Query 661 CGGAGTTATGTTTCAACTGCAACGCATGCAAAGCGGGTGTGTTAGCGAACATAAGAGAGA 720
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 CAGAGTTATGTTTCAACTGCAACGCATGCAAAGCGGGTGTGTTAGCGAACATAAGAGAGA 816
Query 721 AGTGGAGGAATCTTCTTGTTTTCAACATTTGTCTCCTCATTCTCCTCATCACCGTCTATT 780
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 817 AGTGGAGGAATCTTCTTGTTTTCAACATTTGTCTCCTCATTCTCCTCATAACCGTCTATT 876
Query 781 CCTGCGGTTGCTGTGCTCGTCGTAACAATCGGACGGCTAGGAAAAGTGATTCTGTCTGAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CCTGCGGTTGCTGTGCTCGTCGTAACAATCGGACGGCTAGGAAAAGTGATTCTGTCTGAT 936
Query 841 CAACAACTCCATTTCAGTT 859
||||||||| |||||||||
Sbjct 937 CAACAACTCAATTTCAGTT 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5