BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920786

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18530.1 | Symbols:  | EF hand calcium-binding protein famil...   704    0.0  


> AT1G18530.1 | Symbols:  | EF hand calcium-binding protein family 
| chr1:6376783-6377256 FORWARD LENGTH=474
Length=474

 Score =  704 bits (381),  Expect = 0.0
 Identities = 444/475 (93%), Gaps = 2/475 (0%)
 Strand=Plus/Plus

Query  22   ATGGAGGATCAGATAAGGCAA-TTAAAAGACATTTTTGACCGGTTTGACATGGACGCAGA  80
            ||||||||||||||||| ||| || ||||||||||| |||||||| ||||||||||||||
Sbjct  1    ATGGAGGATCAGATAAGACAACTT-AAAGACATTTTCGACCGGTTCGACATGGACGCAGA  59

Query  81   CGGAAGCTTAACAATCTTAGAACTCGCGGCGCTTCTCCGGTCACTCGGCCTCAAACCTTC  140
            |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  60   CGGAAGCTTAACAATCTTAGAACTCGCGGCACTTCTCCGGTCACTCGGTCTCAAACCTTC  119

Query  141  AGGCGACCAAATCCACGTTTTGCTAGCTAGCATGGACGCAAACGGCAATGGTTTTGTCGA  200
             ||||| |||||||| |||||| |||||||||||||| |||||||||| |||||||||||
Sbjct  120  CGGCGATCAAATCCATGTTTTGTTAGCTAGCATGGACTCAAACGGCAACGGTTTTGTCGA  179

Query  201  ATTCGATGAGCTCGTTGGTACAATTCTTCCTGATCTGAACGAAGAGATCCTAATCAATTC  260
            |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct  180  ATTCGATGAGCTCGTTGGTACAATTCTTCCTGATCTTAACGAAGAGGTCCTAATCAATTC  239

Query  261  CGAGCAATTACTCGAGATTTTCAAATCATTCGATAGAGACGGTAACGGGTTCATCAGCGC  320
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct  240  CGAGCAATTACTCGAGATTTTCAAATCGTTCGATAGAGACGGTAACGGGTTCATAAGTGC  299

Query  321  AGCTGAGCTTGCTGGAGCGATGGCGAAGATGGGTCAACCATTGACATATAAAGAACTAAC  380
             ||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||| ||||
Sbjct  300  GGCTGAGCTTGCAGGAGCAATGGCCAAGATGGGTCAACCATTAACGTATAAAGAATTAAC  359

Query  381  GGAGATGATCAAAGAAGCAGATACAAATGGTGACGGTGTTATAAGCTTTGGAGAATTTGC  440
            |||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct  360  GGAGATGATCAAAGAAGCTGATACAAATGGTGATGGTGTTATAAGCTTTGGAGAGTTTGC  419

Query  441  TTCCATTATGGCAAAATCTGCTGTTGATTATTTTGGATTAAAAATTAATTCATGA  495
            ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  420  TTCAATTATGGCAAAATCTGCTGTTGATTACTTTGGATTAAAAATTAATTCGTGA  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24715200324


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5