BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920787
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18540.1 | Symbols: | Ribosomal protein L6 family protein |... 1269 0.0
AT1G74050.1 | Symbols: | Ribosomal protein L6 family protein |... 739 0.0
> AT1G18540.1 | Symbols: | Ribosomal protein L6 family protein
| chr1:6377321-6378580 REVERSE LENGTH=861
Length=861
Score = 1269 bits (687), Expect = 0.0
Identities = 784/830 (94%), Gaps = 10/830 (1%)
Strand=Plus/Plus
Query 10 AAGCAGCAAAAATGCCGGCGGCGAAGCAGAGGACTCCGAAAGTTAACCGTAACCCTGACC 69
|||| | |||||||||||||||| | |||||||||| || |||||||||||||||||||
Sbjct 22 AAGCCGAAAAAATGCCGGCGGCG-A--AGAGGACTCCCAAGGTTAACCGTAACCCTGACC 78
Query 70 TAATCAGGGGGGTCGGCAAATACTCGAGGTCTCAGATGTACCACAAGAGAGGTTTGTGGG 129
|||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 79 TAATCAGGGGAGTTGGAAAATATTCGAGGTCTCAGATGTACCACAAGAGAGGTTTGTGGG 138
Query 130 CTATCAAGGCCAAAAACGGCGGCGTTTTCCCTCGTCACGATGCTAAGTCTAAGGTCGATG 189
||||||||||||| ||||| |||||||||||||||||||||||| || | |||||||| |
Sbjct 139 CTATCAAGGCCAAGAACGGTGGCGTTTTCCCTCGTCACGATGCTCAGCCAAAGGTCGACG 198
Query 190 CTCCGGTGGAGAAGCCTGCCAAGTTTTATCCGGCGGAAGACGTTAAGAAGCCGCTCGTTA 249
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 199 CTCCGGTTGAGAAGCCTGCCAAGTTTTATCCGGCGGAAGACGTCAAGAAGCCGCTTGTTA 258
Query 250 ACAGACGCAAGCCTAAGCCTACCAAGCTAAAATCAAGCATCACTCCAGGAACTGTGTTGA 309
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 259 ACAGACGCAAGCCTAAGCCTACCAAGCTAAAAGCCAGCATCACTCCAGGAACTGTGTTGA 318
Query 310 TCATTCTTGCTGGTAGATTCAAGGGAAAGAGAGTTGTCTTCCTCAAGCAACTTCCTTCTG 369
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 319 TCATTCTTGCTGGTAGATTCAAGGGTAAGAGAGTTGTCTTCCTCAAGCAACTTTCTTCTG 378
Query 370 GTTTGCTTCTTGTAACAGGACCATTCAAGATCAATGGTGTGCCATTGAGACGTGTTAACC 429
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 379 GTTTGCTTCTTGTAACAGGACCATTCAAGATTAATGGTGTTCCATTGAGACGTGTTAACC 438
Query 430 AAGCCTATGTGATTGGAACCTCCACAAAGGTTGACATTTCTGGAGTCAACACTGAGAAAT 489
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 439 AAGCCTATGTGATTGGAACCTCCACAAAGATTGACATTTCTGGAGTCAACACTGAGAAAT 498
Query 490 TCGATGACAAGTATTTTGgaaaggttgctgagaagaagaagaagaaaggagaaggcgaat 549
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 499 TCGATGACAAGTATTTTGGAAAGGTTGCTGAGAAGAAGAAGAAGAAAACAGAAGGCGAAT 558
Query 550 tcttcgaagctgagaaagaggagaagaaagagatcccacaggagaagaaggaagaccaga 609
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 559 TCTTCGAAGCTGAGAAAGAGGAGAAGAAGGAGATCCCACAGGAGAAGAAGGAAGACCAGA 618
Query 610 aaaCCGTTGACGCTGCTCTGATCAAATTCATCG-AGGTAGTCCCAGAGCTCAAGGTTTAC 668
|||||||||| |||||||||||||||| ||| | || | |||||||||||||||||||||
Sbjct 619 AAACCGTTGATGCTGCTCTGATCAAATCCATTGAAGCT-GTCCCAGAGCTCAAGGTTTAC 677
Query 669 CTTGGAGCCAGGTTCTCATTGAGTCAAGGAATGAAACCACATGAGCTTGTTTTCTAGATT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CTTGGAGCCAGGTTCTCATTGAGTCAAGGAATGAAACCACATGAGCTTGTTTTCTAGATT 737
Query 729 TCGTATTGTTTCTCAAATTTTAAGAATATCTGTTTCCCTGAGTTTTTTCCTCTTTAATCA 788
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 738 TCGTATTGTTTCTCAAATTTTAAGAATATCTGTTTCCCTGAGTATTTTCATCTTTAATCG 797
Query 789 TCATTTGAT---AA-GACTATTTTCTCTGATTT-ATATATCAAATTTTCG 833
|| || ||| || |||||||||||||||||| ||||||||||||||||
Sbjct 798 TCCTTGGATCTTAAAGACTATTTTCTCTGATTTTATATATCAAATTTTCG 847
> AT1G74050.1 | Symbols: | Ribosomal protein L6 family protein
| chr1:27847047-27848806 REVERSE LENGTH=1037
Length=1037
Score = 739 bits (400), Expect = 0.0
Identities = 606/707 (86%), Gaps = 8/707 (1%)
Strand=Plus/Plus
Query 28 CGGCGAAGCAGAGGACTCCGAAAGTTAACCGTAACCCTGACCTAATCAGGGGGGTCGGCA 87
||||||| |||||||| ||||| || ||| | |||||||| || |||||||| || || |
Sbjct 131 CGGCGAAACAGAGGACCCCGAAGGTCAACAGAAACCCTGATCTGATCAGGGGTGTTGGTA 190
Query 88 AATACTCGAGGTCTCAGATGTACCACAAGAGAGGTTTGTGGGCTATCAAGGCCAAAAACG 147
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 191 AATACTCGAGATCCCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAGGCCAAAAATG 250
Query 148 GCGGCGTTTTCCCTCGTCACGATGCTAAGTCTAAGGTCGATGCTCCGGTGGAGAAGCCTG 207
| ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 251 GAGGCGTTTTCCCACGTCACGACGCTAAATCTAAGGTTGATGCTCCGGTGGAGAAGCCA- 309
Query 208 CC-AAGTTTTATCCGGCGGAAGACGTTAAGAAGCCGCTCGTTAACAGACGCAAGCCTAAG 266
|| ||||| ||||| || ||||| |||||||| || ||| ||||| |||| | | ||
Sbjct 310 CCGAAGTTCTATCCAGCTGAAGATGTTAAGAAACCTCTCCCCAACAGGCGCACGGCAAAA 369
Query 267 CCTACCAAGCTAAAATCAAGCATCACTCCAGGAACTGTGTTGATCATTCTTGCTGGTAGA 326
|| |||||||| | | | ||||| |||||||| || |||||||| || |||||||||||
Sbjct 370 CCAACCAAGCTCAGAGCTAGCATTACTCCAGGTACAGTGTTGATTATCCTTGCTGGTAGG 429
Query 327 TTCAAGGGAAAGAGAGTTGTCTTCCTCAAGCAACTT-CCTTCTGGTTTGCTTCTTGTAAC 385
|||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||| ||
Sbjct 430 TTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCT-CTGGTTTGCTTCTTGTGAC 488
Query 386 AGGACCATTCAAGATCAATGGTGTGCCATTGAGACGTGTTAACCAAGCCTATGTGATTGG 445
||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 489 TGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAGGCCTATGTGATTGG 548
Query 446 AACCTCCACAAAGGTTGACATTTCTGGAGTCAACACT-GAGAAATTCGATGACAAGTATT 504
|| |||||||||||||||||||||||||||| | || || ||||||||||| ||||| |
Sbjct 549 CACTTCCACAAAGGTTGACATTTCTGGAGTCACC-CTCGATAAATTCGATGATAAGTACT 607
Query 505 TTGgaaaggttgctgagaagaagaagaagaa-aggagaaggcgaattcttcgaagctgag 563
|||| ||||||||||||||||| |||||||| | |||||| || ||||| || ||||||
Sbjct 608 TTGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGAC-AGAAGGAGAGTTCTTTGAGGCTGAG 666
Query 564 aaagaggagaagaaagagatcccacaggagaagaaggaagaccagaaaaCCGTTGACGCT 623
|||||||||||||| ||||||||||||| |||||| || ||||||||| | || || ||
Sbjct 667 AAAGAGGAGAAGAAGGAGATCCCACAGGTGAAGAAAGATGACCAGAAAGCTGTGGATGCA 726
Query 624 GCTCTGATCAAATTCATCGAGGTAGTCCCAGAGCTCAAGGTTTACCTTGGAGCCAGGTTC 683
||| |||||||| ||| || | ||| |||||| | ||| ||||||||| || |||||
Sbjct 727 GCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCTTGGCGCAAGGTTT 786
Query 684 TCATTGAGTCAAGGAATGAAACCACATGAGCTTGTTTTCTAGATTTC 730
||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 787 TCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAGATTTC 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40589190776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5